Factsheet for TraesCS1B01G132900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G114300.1	Wheat	cytosol	98.44	98.44
TraesCS1A01G112700.1	Wheat	cytosol	97.66	97.66
Os05t0169200-01	Rice	cytosol	62.86	63.35
TraesCS3B01G110900.1	Wheat	cytosol	64.94	59.95
AT3G56440.1	Thale cress	cytosol	59.48	58.57
CDY27213	Canola	cytosol	58.7	58.4
CDX72134	Canola	cytosol	58.44	58.14
CDX72135	Canola	cytosol	58.44	58.14
AT2G40810.1	Thale cress	cytosol	58.18	57.0
GSMUA_Achr10P...	Banana	cytosol, plastid	60.78	55.98
Bra016968.1-P	Field mustard	cytosol, plastid	58.96	55.64
Solyc06g048510.2.1	Tomato	cytosol	60.0	55.53
CDY06959	Canola	cytosol, plastid	58.7	55.39
CDY14745	Canola	cytosol, plastid	58.44	55.15
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	57.92	54.39
KRH64240	Soybean	cytosol, plastid	57.4	52.74
KRH53692	Soybean	plastid	57.4	52.62
KXG21420	Sorghum	peroxisome	50.39	48.62
GSMUA_AchrUn_...	Banana	cytosol, plastid	50.65	46.1
TraesCS3B01G490900.1	Wheat	nucleus	47.27	36.84
TraesCS2B01G134500.1	Wheat	cytosol	33.25	32.24
TraesCS2B01G134400.1	Wheat	cytosol	25.97	31.25
TraesCS2B01G134900.1	Wheat	cytosol	33.25	30.55
TraesCS4B01G179000.2	Wheat	plastid	35.32	29.5
TraesCS6B01G386200.1	Wheat	cytosol, mitochondrion, plastid	23.64	24.4

Protein Annotations

EnsemblPlants:TraesCS1B01G132900.1	EnsemblPlantsGene:TraesCS1B01G132900	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227
PANTHER:PTHR11227:SF45	SEG:seg	SMART:SM00320	SUPFAM:SSF50978	MapMan:19.3.2.1.3	:

Description

No Description!

Coordinates

chr1B:+:167931245..167934027

Molecular Weight (calculated)

42884.3 Da

IEP (calculated)

8.474

GRAVY (calculated)

-0.192

Length

385 amino acids

Sequence
(BLAST)

001: MTSQVSPSQG TGGSDVEDED VELFSVNWNQ DHSCFSAATA NGLRMFSCKP FKEQLRRIQE DGGFRIVEML FRTNIFGLVG QGADKQYQQN KLTIWDDCHN
101: LLIGDFSFKS NIRAVKLSKD YFVVALEHEI YVYSFKTLKL IHLIDTTSNP KGLCCLSHHA DISVMACPGT RQGIVRVEHF GSKETKFITA HDSNISCMTL
201: TVDGLLLATA SVRGTLIRIF NTMDGACLQE VRRGVDKAEI YSIALSPNLQ WLAVSSDKGT MHIFSLRARP RGKDASNGKS AIAGRQMDRS YSSGSVGSNV
301: SSSLSFMKGI LPKYFSSEWS FAQFRLPEVT RYITAFGDQT TVMMIGLDGS FYRCNFDPVN GGKMVLDEFI RFMKPSMSRS RTPNT

Best Arabidopsis Sequence Match ( AT2G40810.1 )
(BLAST)

001: MSSTVSNPQG ILQPGSFLLP ESESMKKEEA ELVSVCWNQD SSCFAAGTSH GFRIYNCEPF KETFRRELKD GGFKIVEMLF RSNILALVGG GPNSQYPSSK
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP

Arabidopsis Description

ATG18CAutophagy-related protein 18c [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.