Factsheet for GSMUA_AchrUn_randomP13900_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, plastid	63.59	64.35
CDX72134	Canola	cytosol	56.26	61.5
CDX72135	Canola	cytosol	56.26	61.5
CDY27213	Canola	cytosol	56.26	61.5
Zm00001d039703_P001	Maize	cytosol	60.05	60.91
KRH53692	Soybean	plastid	60.28	60.71
KRH64240	Soybean	cytosol, plastid	60.05	60.62
AT3G56440.1	Thale cress	cytosol	56.03	60.61
TraesCS3A01G095300.1	Wheat	cytosol	59.57	60.43
TraesCS3D01G095500.1	Wheat	cytosol	59.34	60.19
TraesCS3B01G110900.1	Wheat	cytosol	59.34	60.19
HORVU3Hr1G017150.1	Barley	cytosol	59.34	60.19
Solyc06g048510.2.1	Tomato	cytosol	58.87	59.86
AT2G40810.1	Thale cress	cytosol	55.56	59.8
OQU86240	Sorghum	cytosol	59.34	59.76
Os01t0168500-01	Rice	cytosol	58.87	59.71
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	57.21	59.02
GSMUA_Achr11P...	Banana	cytosol	41.61	58.67
Bra016968.1-P	Field mustard	cytosol, plastid	56.5	58.58
CDY06959	Canola	cytosol, plastid	56.26	58.33
CDY14745	Canola	cytosol, plastid	55.79	57.84
Zm00001d008691_P001	Maize	cytosol	58.63	57.01
HORVU3Hr1G017140.1	Barley	extracellular, plasma membrane	8.98	55.07
TraesCS1B01G132900.1	Wheat	cytosol	46.1	50.65
TraesCS1D01G114300.1	Wheat	cytosol	46.1	50.65
TraesCS1A01G112700.1	Wheat	cytosol	45.39	49.87
Os05t0169200-01	Rice	cytosol	44.68	49.48
KXG21420	Sorghum	peroxisome	37.12	39.35
GSMUA_Achr8P10070_001	Banana	cytosol	43.5	30.51
GSMUA_Achr9P13430_001	Banana	plastid	22.46	25.82

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP13900_001	EnsemblPlants:GSMUA_AchrUn_randomT13900_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG13900_001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf
PANTHER:PTHR11227	PANTHER:PTHR11227:SF45	SEG:seg	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000296D758
UniProt:M0U8Z9	MapMan:19.3.2.1.3	:	:	:	:

Description

Putative WD repeat domain phosphoinositide-interacting protein 3 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG13900_001]

Coordinates

chrchrUn_random:-:65671864..65682493

Molecular Weight (calculated)

47804.7 Da

IEP (calculated)

8.622

GRAVY (calculated)

-0.115

Length

423 amino acids

Sequence
(BLAST)

001: MSSTIPTSPD IHPSMMISSL EHPHSQQSTA SSGQSEPEIA DDSEIKLLSV SWNQNYGRFA FGTSNGFRIY NCDSLTEAFR RDFKGGGFRI VEMLFRCNFL
101: ALVGEDTNTQ FPPNKVMIWD DHQRRCTYEL TFRSHVRGVK LSRDLIVVVL EHKIYVYNFA DLKLVHQLET LSNPKGLCCL SHHSNTLVLT CPGIRRGEVR
201: VEHLFLKMKK IISAHDSQIA CMTLTLNGLL LATASTKGTL IRIFNTNDGT RLQEVRRGLD RADIYSISFS PNAQWLAVSS DKGTVHVFSL RQNALISAKT
301: GGNTNSFHFI KSEMIRAVVF LFSILFYVQV AQVDLPLGRY HMLKLLNHLC KLQSSGVLPK YFSSEWSSAQ FHLAEETYHI AAFDAQDTVM IVGMDGSFYK
401: CTFDQVKGGQ MVQQDHMRLL KKI

Best Arabidopsis Sequence Match ( AT3G56440.1 )
(BLAST)

001: MDPRRNFQPG GYDSRNTFTS GSFGPPDFGE SDEAELVSVS WNQDYSCFAA GTSHGFRIYN CEPFKETFRR ELKDGGFKIV EMLFRSNILA LVGGGPNSQY
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R

Arabidopsis Description

ATG18DAutophagy-related protein 18d [Source:UniProtKB/Swiss-Prot;Acc:Q0WPK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.