Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G017150.1 | Barley | cytosol | 72.46 | 11.99 |
| Zm00001d039703_P001 | Maize | cytosol | 71.01 | 11.75 |
| TraesCS3D01G095500.1 | Wheat | cytosol | 71.01 | 11.75 |
| TraesCS3B01G110900.1 | Wheat | cytosol | 71.01 | 11.75 |
| TraesCS3A01G095300.1 | Wheat | cytosol | 71.01 | 11.75 |
| Os01t0168500-01 | Rice | cytosol | 71.01 | 11.75 |
| OQU86240 | Sorghum | cytosol | 71.01 | 11.67 |
| Zm00001d008691_P001 | Maize | cytosol | 71.01 | 11.26 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 63.77 | 10.53 |
| KRH64240 | Soybean | cytosol, plastid | 60.87 | 10.02 |
| KRH53692 | Soybean | plastid | 60.87 | 10.0 |
| AT3G56440.1 | Thale cress | cytosol | 56.52 | 9.97 |
| Solyc06g048510.2.1 | Tomato | cytosol | 59.42 | 9.86 |
| CDY27213 | Canola | cytosol | 53.62 | 9.56 |
| CDX72135 | Canola | cytosol | 53.62 | 9.56 |
| CDX72134 | Canola | cytosol | 53.62 | 9.56 |
| VIT_13s0067g00170.t01 | Wine grape | cytosol, plastid | 56.52 | 9.51 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 55.07 | 8.98 |
| AT2G40810.1 | Thale cress | cytosol | 50.72 | 8.91 |
| CDY14745 | Canola | cytosol, plastid | 52.17 | 8.82 |
| CDY06959 | Canola | cytosol, plastid | 52.17 | 8.82 |
| Bra016968.1-P | Field mustard | cytosol, plastid | 52.17 | 8.82 |
| HORVU3Hr1G098020.1 | Barley | cytosol, plastid | 52.17 | 7.09 |
| HORVU6Hr1G084430.3 | Barley | cytosol | 23.19 | 3.59 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G017140.1 | EnsemblPlantsGene:HORVU3Hr1G017140 | PANTHER:PTHR11227 | PANTHER:PTHR11227:SF45 | TMHMM:TMhelix | UniParc:UPI000B479563 |
| UniProt:A0A287K9H9 | MapMan:19.3.2.1.3 | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:43200995..43201278
Molecular Weight (calculated)
7726.5 Da
IEP (calculated)
8.041
GRAVY (calculated)
0.551
Length
69 amino acids
Sequence
(BLAST)
(BLAST)
1: ASQRILLVKA LTYCCCISLG ILPKYFSSEW SFAQFHLPEI TRYIVAFGAQ NTVMMVGLDG RYSSVALMD
001: MDPRRNFQPG GYDSRNTFTS GSFGPPDFGE SDEAELVSVS WNQDYSCFAA GTSHGFRIYN CEPFKETFRR ELKDGGFKIV EMLFRSNILA LVGGGPNSQY
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GR
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GR
Arabidopsis Description
ATG18DAutophagy-related protein 18d [Source:UniProtKB/Swiss-Prot;Acc:Q0WPK3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.