Factsheet for HORVU6Hr1G084430.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G386200.1	Wheat	cytosol, mitochondrion, plastid	83.18	99.46
TraesCS6D01G335900.1	Wheat	cytosol, mitochondrion, plastid	82.96	99.2
TraesCS6A01G353600.1	Wheat	cytosol, mitochondrion, plastid	82.96	99.2
KXG31257	Sorghum	cytosol	64.35	77.36
Zm00001d018355_P005	Maize	cytosol, plastid	63.68	76.55
Os02t0791800-01	Rice	cytosol	62.78	74.87
VIT_11s0037g00970.t01	Wine grape	cytosol	36.32	61.6
GSMUA_Achr9P13430_001	Banana	plastid	49.55	60.05
VIT_03s0091g00190.t01	Wine grape	plastid	12.33	58.51
KRH72365	Soybean	cytosol	46.19	55.98
KRH02984	Soybean	cytosol	45.96	55.56
KRH07770	Soybean	plastid	25.56	54.55
AT4G30510.1	Thale cress	cytosol	44.17	53.83
Bra024070.1-P	Field mustard	plastid	44.17	53.83
CDY39210	Canola	cytosol, plastid	44.17	53.68
Solyc07g006120.2.1	Tomato	cytosol	43.72	53.42
CDX72248	Canola	plastid	43.95	53.41
PGSC0003DMT400028996	Potato	cytosol	43.5	53.15
KRH33489	Soybean	cytosol	16.59	50.68
HORVU3Hr1G017150.1	Barley	cytosol	22.87	24.46
HORVU3Hr1G017140.1	Barley	extracellular, plasma membrane	3.59	23.19
HORVU3Hr1G098020.1	Barley	cytosol, plastid	22.65	19.88

Protein Annotations

EnsemblPlants:HORVU6Hr1G084430.3	EnsemblPlantsGene:HORVU6Hr1G084430	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227	PANTHER:PTHR11227:SF17	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000B4739A1	UniProt:A0A287UZQ8	MapMan:19.3.2.1.3	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:554763404..554767114

Molecular Weight (calculated)

49528.0 Da

IEP (calculated)

9.998

GRAVY (calculated)

-0.334

Length

446 amino acids

Sequence
(BLAST)

001: PSPRRYETGK KLHVKHPGPA IPPPNIFHYF IPGHARRRRN PTSLQPRRRE KKSRYFRLTG IDSGERFRQA AAAMASGSSR PQILCVSFNQ DNSMFSVGTK
101: EGFKIFDART GRLCNDNKLG GLNVVELWFA TNLIAMVGTG EQPSRSPRRL CLFNTITGAS KKDLNFRSTI LAVRFSRTRL IVVLQDKTFI YDLNSTRILE
201: EIDTVHNPKG LCAFAPNSEW CYLAIPASTS KGSALVYKAS EPELICQIDA HESPLAAMAF SSNGMYLATA SEKGTMIRVY IVAQATKSHS FRRGAYPSTI
301: YSLSFGPCID RPDVLAATSS SGSLHMFFLD AARNGRNQTN KLLGSIIPGS KAISDALDPA NHHVIHNIAP AETKSCLAVH SVEYSQNSSK FPAVRTVVYV
401: VTHDGYFREY TISTTKSNES SWVLEREFSL LDTGHTLKQN EHHHVD

Best Arabidopsis Sequence Match ( AT4G30510.1 )
(BLAST)

001: MANLSSLPSP IYCVSFNQDN SGFAISWKDS FKIFDSTTGR LCYERAAGAF VIVEMLYSSD LLAIVGAGEQ ASLSPRRLCL FKTTTGLPLR ELNFLTSILA
101: VRMNKKRLVV VLLEKTFVYD LNTLVMLDTI DTVPNPKGLS AFSPSLEGCY LAVPASTTKG SVLVYNVMDL QSHSEIDAHR SPLAAIALSS NGMYIATGSE
201: QGTLIRVHLV SEATKSYSFR RGTYPSTIYS LSFGPSTQLP DILIATSSSG SIHAFSLSLA INQRSKRSTS FLGSVLPDSV SDALDPAHHH VLQNAVSSGI
301: RSYAVVRKID KLEGTSSPSH FTSLRATVSV ITYNGYFQEY TLSINNKNES LWTLEREFNL FSITTG

Arabidopsis Description

ATG18BAutophagy-related protein 18b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Q8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.