CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0091g00190.t01	Wine grape	plastid	27.27	60.64
KRH72365	Soybean	cytosol	87.08	49.46
KRH02984	Soybean	cytosol	85.65	48.51
KRH33489	Soybean	cytosol	32.06	45.89
VIT_11s0037g00970.t01	Wine grape	cytosol	56.94	45.25
Solyc07g006120.2.1	Tomato	cytosol	65.55	37.53
PGSC0003DMT400028996	Potato	cytosol	65.55	37.53
AT4G30510.1	Thale cress	cytosol	64.11	36.61
Bra024070.1-P	Field mustard	plastid	62.68	35.79
CDY39210	Canola	cytosol, plastid	62.68	35.69
CDX72248	Canola	plastid	61.72	35.15
GSMUA_Achr9P13430_001	Banana	plastid	61.72	35.05
Zm00001d018355_P005	Maize	cytosol, plastid	55.98	31.54
KXG31257	Sorghum	cytosol	55.98	31.54
Os02t0791800-01	Rice	cytosol	55.02	30.75
TraesCS6B01G386200.1	Wheat	cytosol, mitochondrion, plastid	54.55	30.56
TraesCS6D01G335900.1	Wheat	cytosol, mitochondrion, plastid	54.55	30.56
TraesCS6A01G353600.1	Wheat	cytosol, mitochondrion, plastid	54.07	30.29
HORVU6Hr1G084430.3	Barley	cytosol	54.55	25.56
KRH33898	Soybean	nucleus	25.84	14.36
KRH68154	Soybean	cytosol, plastid	28.71	14.18
KRG92887	Soybean	cytosol	25.36	14.06
KRG96415	Soybean	cytosol, plastid	27.75	13.71
KRH64240	Soybean	cytosol, plastid	25.36	12.65
KRH53692	Soybean	plastid	25.36	12.62
KRH50149	Soybean	cytosol, mitochondrion	0.0	0.0

Protein Annotations

MapMan:35.1	UniProt:A0A0R0FP94	EMBL:ACUP02010101	EnsemblPlantsGene:GLYMA_16G109400	GO:GO:0000422	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006464	GO:GO:0006497	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0019538
GO:GO:0019898	GO:GO:0032266	GO:GO:0034045	GO:GO:0034497	GO:GO:0044804	GO:GO:0080025
EnsemblPlants:KRH07770	ProteinID:KRH07770	ProteinID:KRH07770.1	PANTHER:PTHR11227	PANTHER:PTHR11227:SF17	SUPFAM:SSF50978
UniParc:UPI0006ED924E	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:23481725..23483856

Molecular Weight (calculated)

23327.4 Da

IEP (calculated)

8.711

GRAVY (calculated)

0.268

Length

209 amino acids

Sequence
(BLAST)

001: MLFSSNHLAI VGASHQPSLS SRRICLFNTT TGATLRELNF LTSILIVRMN RQRLIVILQD KAYIYEINSL IILDIIETVP NIKGLCAFFP YLDACYLALP
101: ASTTKGSALL YNIMECHLHC ESYSFRRGTY LSTIFSLSFG QSKWLPDILA ASSSSGHIHL FTLGFASHPS RSKRSSGFLG SIIPDDVYDM LDLAYHHVLH
201: NLVPTGVKR

Best Arabidopsis Sequence Match ( AT4G30510.1 )
(BLAST)

001: MANLSSLPSP IYCVSFNQDN SGFAISWKDS FKIFDSTTGR LCYERAAGAF VIVEMLYSSD LLAIVGAGEQ ASLSPRRLCL FKTTTGLPLR ELNFLTSILA
101: VRMNKKRLVV VLLEKTFVYD LNTLVMLDTI DTVPNPKGLS AFSPSLEGCY LAVPASTTKG SVLVYNVMDL QSHSEIDAHR SPLAAIALSS NGMYIATGSE
201: QGTLIRVHLV SEATKSYSFR RGTYPSTIYS LSFGPSTQLP DILIATSSSG SIHAFSLSLA INQRSKRSTS FLGSVLPDSV SDALDPAHHH VLQNAVSSGI
301: RSYAVVRKID KLEGTSSPSH FTSLRATVSV ITYNGYFQEY TLSINNKNES LWTLEREFNL FSITTG

Arabidopsis Description

ATG18BAutophagy-related protein 18b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Q8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.