Factsheet for VIT_11s0037g00970.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0091g00190.t01	Wine grape	plastid	30.8	86.17
KRH33489	Soybean	cytosol	36.5	65.75
KRH07770	Soybean	plastid	45.25	56.94
AT4G30510.1	Thale cress	cytosol	77.95	56.01
Solyc07g006120.2.1	Tomato	cytosol	77.57	55.89
CDY39210	Canola	cytosol, plastid	77.95	55.86
Bra024070.1-P	Field mustard	plastid	77.57	55.74
PGSC0003DMT400028996	Potato	cytosol	77.19	55.62
CDX72248	Canola	plastid	77.19	55.31
KRH02984	Soybean	cytosol	77.57	55.28
KRH72365	Soybean	cytosol	76.81	54.89
GSMUA_Achr9P13430_001	Banana	plastid	73.0	52.17
Zm00001d018355_P005	Maize	cytosol, plastid	65.78	46.63
KXG31257	Sorghum	cytosol	65.4	46.36
TraesCS6B01G386200.1	Wheat	cytosol, mitochondrion, plastid	61.6	43.43
TraesCS6D01G335900.1	Wheat	cytosol, mitochondrion, plastid	61.6	43.43
TraesCS6A01G353600.1	Wheat	cytosol, mitochondrion, plastid	61.22	43.16
Os02t0791800-01	Rice	cytosol	61.22	43.05
HORVU6Hr1G084430.3	Barley	cytosol	61.6	36.32
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	32.7	20.98
VIT_07s0104g01790.t01	Wine grape	plastid	33.08	20.52
VIT_14s0060g02380.t01	Wine grape	plastid	32.32	20.0
VIT_07s0104g01780.t01	Wine grape	plastid	32.32	19.36

Protein Annotations

EntrezGene:100854449	wikigene:100854449	MapMan:19.3.2.1.3	Gene3D:2.130.10.10	ProteinID:CCB59795	ProteinID:CCB59795.1
UniProt:F6HYN1	EMBL:FN596499	GO:GO:0000422	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464
GO:GO:0006497	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0019538	GO:GO:0019898
GO:GO:0032266	GO:GO:0034045	GO:GO:0034497	GO:GO:0044804	GO:GO:0080025	InterPro:IPR001680
InterPro:IPR015943	EntrezGene:LOC100854449	wikigene:LOC100854449	PANTHER:PTHR11227	PANTHER:PTHR11227:SF17	SMART:SM00320
SUPFAM:SSF50978	TMHMM:TMhelix	UniParc:UPI0002108317	ArrayExpress:VIT_11s0037g00970	EnsemblPlantsGene:VIT_11s0037g00970	EnsemblPlants:VIT_11s0037g00970.t01
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	RefSeq:XP_003633169	RefSeq:XP_003633169.1	:

Description

No Description!

Coordinates

chr11:+:9810577..9847626

Molecular Weight (calculated)

28519.2 Da

IEP (calculated)

7.900

GRAVY (calculated)

0.212

Length

263 amino acids

Sequence
(BLAST)

001: MANHSSSYPI LCASFNQDTS YFAIGTRDGF KVFDSETGTL RYERAIGGFI IVEMLFSSSL LAIVGAGEQP SLSPRRLCLF NTTTGAALRE LNFLTSVLAI
101: RLNRKRLVVV LQEKTYIYDL NSLSILDTID TVPNSKGLCA FSPSLDGCFL ALPASTTRGS VLVYNVMELH SHCEIDAHRS PLAAIVFSPN GMYIATASEQ
201: GTIIRVHLIS EATKSYSFRR GAYPSTIFSL SFGPSTQFPD VLVATSSSGS VHAFSLGLGM NQR

Best Arabidopsis Sequence Match ( AT4G30510.1 )
(BLAST)

001: MANLSSLPSP IYCVSFNQDN SGFAISWKDS FKIFDSTTGR LCYERAAGAF VIVEMLYSSD LLAIVGAGEQ ASLSPRRLCL FKTTTGLPLR ELNFLTSILA
101: VRMNKKRLVV VLLEKTFVYD LNTLVMLDTI DTVPNPKGLS AFSPSLEGCY LAVPASTTKG SVLVYNVMDL QSHSEIDAHR SPLAAIALSS NGMYIATGSE
201: QGTLIRVHLV SEATKSYSFR RGTYPSTIYS LSFGPSTQLP DILIATSSSG SIHAFSLSLA INQRSKRSTS FLGSVLPDSV SDALDPAHHH VLQNAVSSGI
301: RSYAVVRKID KLEGTSSPSH FTSLRATVSV ITYNGYFQEY TLSINNKNES LWTLEREFNL FSITTG

Arabidopsis Description

ATG18BAutophagy-related protein 18b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Q8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.