Factsheet for VIT_14s0060g02380.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	57.65	81.67
KRG92887	Soybean	cytosol	70.59	79.58
KRH33898	Soybean	nucleus	69.18	78.19
VIT_07s0104g01780.t01	Wine grape	plastid	74.35	71.98
VIT_07s0104g01790.t01	Wine grape	plastid	70.12	70.28
PGSC0003DMT400063510	Potato	nucleus	73.18	70.05
Solyc01g099400.2.1	Tomato	mitochondrion	47.76	64.04
Os01t0934000-01	Rice	plasma membrane	66.12	61.49
Zm00001d042215_P002	Maize	cytosol, extracellular	64.71	61.25
EES04163	Sorghum	cytosol	65.65	61.18
Zm00001d011920_P003	Maize	cytosol	64.94	57.14
TraesCS3A01G453200.1	Wheat	cytosol	64.0	55.74
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	53.18	55.12
TraesCS3B01G490900.1	Wheat	nucleus	64.0	55.06
HORVU3Hr1G098020.1	Barley	cytosol, plastid	64.24	53.74
Zm00001d010645_P001	Maize	cytosol	34.82	48.68
GSMUA_Achr8P10070_001	Banana	cytosol	61.88	43.62
Zm00001d015812_P001	Maize	cytosol	17.41	43.27
VIT_11s0037g00970.t01	Wine grape	cytosol	20.0	32.32
VIT_03s0091g00190.t01	Wine grape	plastid	6.59	29.79

Protein Annotations

EntrezGene:100251047	wikigene:100251047	MapMan:19.3.2.1.3	EMBL:AM450609	ProteinID:CAN67661	ProteinID:CAN67661.1
ProteinID:CCB61849	ProteinID:CCB61849.1	UniProt:F6I4L2	EMBL:FN596746	GO:GO:0000422	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006464	GO:GO:0006497	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0019538
GO:GO:0019898	GO:GO:0032266	GO:GO:0034045	GO:GO:0034497	GO:GO:0044804	GO:GO:0080025
InterPro:IPR001680	EntrezGene:LOC100251047	wikigene:LOC100251047	PFAM:PF00400	PANTHER:PTHR11227	PANTHER:PTHR11227:SF33
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00019849DA	ArrayExpress:VIT_14s0060g02380	EnsemblPlantsGene:VIT_14s0060g02380	EnsemblPlants:VIT_14s0060g02380.t01
InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002283982	RefSeq:XP_002283982.1	RefSeq:XP_019080830.1	SEG:seg

Description

No Description!

Coordinates

chr14:-:1980256..1985503

Molecular Weight (calculated)

46665.3 Da

IEP (calculated)

6.837

GRAVY (calculated)

-0.205

Length

425 amino acids

Sequence
(BLAST)

001: MATLSPPSSS ASWPLPPSGP NPNPNFLSPP VAPNSPPSAS SSQTIDLPES EYNDDSVPPS ADPTRFPAPT LLHLSFNQDH GCFSAGTDHG FRIYNCDPFR
101: EIFRRDFCGD DGGSGTGIGV VEMLFRCNIL ALVGGGPDPQ YPPNKVMIWD DHQTRCIGEL SFRSEVKSVR LRRDRIVAIL LQKIFVYNFA DLKLLHQIET
201: IANPKGLCEV SQLSGSMVLV CPGLLKGQVR VEHYNSKRTK FIMAHDSRIA CFALTQDGRL LATSSSKGTL VRIFNTLDGT LLQEVRRGAD RAEIYSVAFS
301: SSAQWLAVSS DKGTVHVFSL KVESGSLGSD RSRSSSEPNL SVPSAVSSLS FMKGVLPRYF SSEWSVAQFR LHEGSQYIVA FGHQKNTVVI LGMDGSFYRC
401: QFDPVAGGEM TQLEYYNFLK PEETF

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.