Factsheet for Zm00001d010645_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015812_P001	Maize	cytosol	46.05	81.87
Zm00001d042215_P002	Maize	cytosol, extracellular	77.63	52.56
EES04163	Sorghum	cytosol	70.72	47.15
Os01t0934000-01	Rice	plasma membrane	66.12	43.98
Zm00001d011920_P003	Maize	cytosol	69.08	43.48
TraesCS3A01G453200.1	Wheat	cytosol	59.87	37.3
TraesCS3B01G490900.1	Wheat	nucleus	60.2	37.04
HORVU3Hr1G098020.1	Barley	cytosol, plastid	59.54	35.63
VIT_14s0060g02380.t01	Wine grape	plastid	48.68	34.82
KRG92887	Soybean	cytosol	43.09	34.75
KRH33898	Soybean	nucleus	42.11	34.04
GSMUA_Achr11P...	Banana	cytosol	33.55	34.0
PGSC0003DMT400063510	Potato	nucleus	49.34	33.78
Zm00001d039703_P001	Maize	cytosol	42.43	30.94
Zm00001d008691_P001	Maize	cytosol	39.14	27.36
GSMUA_Achr8P10070_001	Banana	cytosol	40.46	20.4
Solyc01g099400.2.1	Tomato	mitochondrion	18.09	17.35
Zm00001d018355_P005	Maize	cytosol, plastid	20.72	16.98

Protein Annotations

EnsemblPlants:Zm00001d010645_P001	EnsemblPlants:Zm00001d010645_T001	EnsemblPlantsGene:Zm00001d010645	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227	PANTHER:PTHR11227:SF33	ProteinID:AQK94544.1	SEG:seg	SUPFAM:SSF50978
UniParc:UPI000220C31E	UniProt:K7V4L9	MapMan:19.3.2.1.3	:	:	:

Description

autophagy18jAutophagy-related protein 18a

Coordinates

chr8:+:122851051..122852068

Molecular Weight (calculated)

32941.7 Da

IEP (calculated)

8.149

GRAVY (calculated)

-0.142

Length

304 amino acids

Sequence
(BLAST)

001: MATLASVPTP PNPNPVSGDL PSLLLQQQEE EEVSEPVPET ALTPLTTSID PTPSSGKESE SDDSLSVWST PSSAPTHVLA PSPAAKDILH ISFNQDYGCF
101: AAGTKSGFCI YNCDPFREIF RRDLTAEGGI SVGARGGGIG VEMLFRCNIL ALVGGGDNPH YPPNKVMIWD DHQSRCIGEL SFRSPVRGVR LRRERIIVVL
201: ENKIFVYNFT DLKLLYQIDT LSNPKGLCAV SQQPGSIVLV CPGAQKGLVR WNTIRQGRPS LSMHTLPASR ALRCRGMGGS LRLLASRGLL LESTMQLKAI
301: SCRK

Best Arabidopsis Sequence Match ( AT3G56440.1 )
(BLAST)

001: MDPRRNFQPG GYDSRNTFTS GSFGPPDFGE SDEAELVSVS WNQDYSCFAA GTSHGFRIYN CEPFKETFRR ELKDGGFKIV EMLFRSNILA LVGGGPNSQY
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R

Arabidopsis Description

ATG18DAutophagy-related protein 18d [Source:UniProtKB/Swiss-Prot;Acc:Q0WPK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.