Factsheet for Zm00001d042215_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04163	Sorghum	cytosol	89.53	88.16
Zm00001d015812_P001	Maize	cytosol	32.74	85.96
Os01t0934000-01	Rice	plasma membrane	85.08	83.59
Zm00001d011920_P003	Maize	cytosol	86.86	80.75
GSMUA_Achr11P...	Banana	cytosol	53.23	79.67
Zm00001d010645_P001	Maize	cytosol	52.56	77.63
TraesCS3A01G453200.1	Wheat	cytosol	78.4	72.13
TraesCS3B01G490900.1	Wheat	nucleus	78.84	71.66
HORVU3Hr1G098020.1	Barley	cytosol, plastid	78.4	69.29
KRG92887	Soybean	cytosol	55.68	66.31
KRH33898	Soybean	nucleus	54.57	65.16
VIT_14s0060g02380.t01	Wine grape	plastid	61.25	64.71
PGSC0003DMT400063510	Potato	nucleus	59.02	59.68
Zm00001d039703_P001	Maize	cytosol	49.89	53.72
Solyc01g099400.2.1	Tomato	mitochondrion	37.64	53.31
Zm00001d008691_P001	Maize	cytosol	47.22	48.74
GSMUA_Achr8P10070_001	Banana	cytosol	57.02	42.45
Zm00001d018355_P005	Maize	cytosol, plastid	23.39	28.3

Protein Annotations

EntrezGene:100272812	MapMan:19.3.2.1.3	UniProt:B4FQV7	EMBL:BT039495	EMBL:BT054588	EMBL:EU959710
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR017986	ProteinID:ONM34819.1
ProteinID:ONM34820.1	PFAM:PF00400	PFscan:PS50294	PANTHER:PTHR11227	PANTHER:PTHR11227:SF33	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00017B77AD	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d042215
EnsemblPlants:Zm00001d042215_P002	EnsemblPlants:Zm00001d042215_T002	SEG:seg	:	:	:

Description

autophagy18bAutophagy-related protein 18a

Coordinates

chr3:+:156417053..156421558

Molecular Weight (calculated)

48582.7 Da

IEP (calculated)

6.729

GRAVY (calculated)

-0.241

Length

449 amino acids

Sequence
(BLAST)

001: MATPASAPAT PNPNPVSGDP PSLLLQQQQE EEVPAPVPET APTPLTTSID PTPSGGEEGE SDDSSSVWSA PSSAPTPVLA PAPAPAAPSP AAKDILHISF
101: NQDYGCFAAG TKSGFRIYNC DPFREIFRRD LAAEGGVGAG GGGIGVVEML FRCNILALVG GGDNPHYPPN KVMIWDDHQS RCIGELSFRS PVRGVRLRRE
201: RIIVVLENKI FVYNFADLKL LHQIDTLSNP KGLCAVSQQP GSIVLVCPGA QKGQVRVEHY KTRKTKFINA HTSRVACFAL SQDGRLIATA STKGTLVRIY
301: NAAEGNLLQE VRRGADRAEI YSLAFSNDLQ YLAVSSDKGT IHVFNLKINV GSTANDKPMP SPDPEVPHIR PSLSFIKGVL PKYFHSEWSV AQFRLQEGEH
401: YIVAFGHEKN TVAVVGMDGS FYRCRFDPVN GGEMLQLDCY SFLKPSDQP

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.