Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G490900.1 | Wheat | nucleus | 97.54 | 96.36 |
| HORVU3Hr1G098020.1 | Barley | cytosol, plastid | 89.14 | 85.63 |
| Os01t0934000-01 | Rice | plasma membrane | 79.51 | 84.9 |
| EES04163 | Sorghum | cytosol | 77.46 | 82.89 |
| GSMUA_Achr11P... | Banana | cytosol | 49.8 | 81.0 |
| Zm00001d042215_P002 | Maize | cytosol, extracellular | 72.13 | 78.4 |
| Zm00001d011920_P003 | Maize | cytosol | 75.0 | 75.78 |
| KRG92887 | Soybean | cytosol | 52.25 | 67.64 |
| KRH33898 | Soybean | nucleus | 50.61 | 65.69 |
| VIT_14s0060g02380.t01 | Wine grape | plastid | 55.74 | 64.0 |
| Zm00001d010645_P001 | Maize | cytosol | 37.3 | 59.87 |
| PGSC0003DMT400063510 | Potato | nucleus | 53.28 | 58.56 |
| Zm00001d015812_P001 | Maize | cytosol | 20.08 | 57.31 |
| TraesCS3A01G095300.1 | Wheat | cytosol | 46.11 | 53.96 |
| Solyc01g099400.2.1 | Tomato | mitochondrion | 33.61 | 51.73 |
| TraesCS1A01G112700.1 | Wheat | cytosol | 36.89 | 46.75 |
| GSMUA_Achr8P10070_001 | Banana | cytosol | 55.74 | 45.11 |
| TraesCS2A01G115200.1 | Wheat | cytosol | 27.87 | 33.66 |
| TraesCS6A01G353600.1 | Wheat | cytosol, mitochondrion, plastid | 20.49 | 26.81 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G453200.1 | EnsemblPlantsGene:TraesCS3A01G453200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 |
| InterPro:WD40_repeat | InterPro:WD40_repeat_dom_sf | PANTHER:PTHR11227 | PANTHER:PTHR11227:SF33 | PFAM:PF00400 | SEG:seg |
| SMART:SM00320 | SUPFAM:SSF50978 | MapMan:19.3.2.1.3 | : | : | : |
Description
No Description!
Coordinates
chr3A:-:691107425..691112092
Molecular Weight (calculated)
52680.1 Da
IEP (calculated)
5.124
GRAVY (calculated)
-0.371
Length
488 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPALPNPS PLLDDPLPPE PKPRREPKVR DPDAREPPAA AQDPEEDAPE EPEPEQDEGP EPPPLPTDAI EPTPSGAEVE DGDDTSSVSS VSSAAAATDA
101: AAATGGKTER PFPAATDLLH ISYNQDYGCF AAGTKTGFRI YNCDPFREIF RRDLGPSPTA VPGEEAAQAL HQPAVAGGGG GGIGVVEMLF RCNILALVGG
201: GDAPHYPPNK VMIWDDHQSR CIGELSFKSP VRGVRLRRDR IVVVLENKIF VYNFADLKLV QQIETAPNPK GLCSVSQQPG SIVLVCPGAQ KGQIRVEHYG
301: ARKTKFINAH ASRVACFALS QDGRLIATAS TKGTLVRIFN AAEGNLLQEV RRGADRAEIY SLAFSNNLQY LAVSSDKGTI HVFNLKINVG LTTNDKPLPA
401: PDADVPHMSP SFSFIKGVLP KYFHSEWSVA QFRLHEGEQY IVAFGHEKNT VAVVGMDGSF YRCQFDPVNG GEMQQLECHN FLKPSDQP
101: AAATGGKTER PFPAATDLLH ISYNQDYGCF AAGTKTGFRI YNCDPFREIF RRDLGPSPTA VPGEEAAQAL HQPAVAGGGG GGIGVVEMLF RCNILALVGG
201: GDAPHYPPNK VMIWDDHQSR CIGELSFKSP VRGVRLRRDR IVVVLENKIF VYNFADLKLV QQIETAPNPK GLCSVSQQPG SIVLVCPGAQ KGQIRVEHYG
301: ARKTKFINAH ASRVACFALS QDGRLIATAS TKGTLVRIFN AAEGNLLQEV RRGADRAEIY SLAFSNNLQY LAVSSDKGTI HVFNLKINVG LTTNDKPLPA
401: PDADVPHMSP SFSFIKGVLP KYFHSEWSVA QFRLHEGEQY IVAFGHEKNT VAVVGMDGSF YRCQFDPVNG GEMQQLECHN FLKPSDQP
001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF
Arabidopsis Description
ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.