Factsheet for Zm00001d011920_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04163	Sorghum	cytosol	85.71	90.79
Zm00001d042215_P002	Maize	cytosol, extracellular	80.75	86.86
Os01t0934000-01	Rice	plasma membrane	81.16	85.78
GSMUA_Achr11P...	Banana	cytosol	51.35	82.67
TraesCS3A01G453200.1	Wheat	cytosol	75.78	75.0
TraesCS3B01G490900.1	Wheat	nucleus	75.78	74.09
Zm00001d015812_P001	Maize	cytosol	25.67	72.51
HORVU3Hr1G098020.1	Barley	cytosol, plastid	75.57	71.85
Zm00001d010645_P001	Maize	cytosol	43.48	69.08
KRG92887	Soybean	cytosol	51.97	66.58
KRH33898	Soybean	nucleus	50.93	65.43
VIT_14s0060g02380.t01	Wine grape	plastid	57.14	64.94
PGSC0003DMT400063510	Potato	nucleus	55.28	60.14
Zm00001d039703_P001	Maize	cytosol	47.0	54.44
Solyc01g099400.2.1	Tomato	mitochondrion	34.58	52.68
Zm00001d008691_P001	Maize	cytosol	44.31	49.2
GSMUA_Achr8P10070_001	Banana	cytosol	54.87	43.95
Zm00001d018355_P005	Maize	cytosol, plastid	21.33	27.76

Protein Annotations

MapMan:19.3.2.1.3	Gene3D:2.130.10.10	UniProt:A0A1D6G4W3	ProteinID:AQK98322.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFscan:PS50294
PANTHER:PTHR11227	PANTHER:PTHR11227:SF33	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0008442835	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d011920	EnsemblPlants:Zm00001d011920_P003	EnsemblPlants:Zm00001d011920_T003
SEG:seg	:	:	:	:	:

Description

autophagy18aWD repeat-containing protein domain phosphoinositide-interacting protein 3

Coordinates

chr8:+:164595646..164600231

Molecular Weight (calculated)

52462.0 Da

IEP (calculated)

6.890

GRAVY (calculated)

-0.296

Length

483 amino acids

Sequence
(BLAST)

001: MEPPASSPAP PNPNPVPDDR PLQQQVEEAR APEPEPERET SPTSLTTSID PTPSGGEESE SDDSSSVSSA PSSASAPAAA APFPTAKDLL HISFNQDYGC
101: FAAGTKSGFR IYNCDPFREI FRRDLAADGG GAGGGGIGVV EMLFRCNILA LVGGGDNPHY PPNKVMIWDD HQSRCIGELS FRSPVRGVRL RRDRIIVVLE
201: NKIFVYNFAD LKLVHQIETA PNPKGLCAVS QQPGSIVLVC PGAQKGQVRV EHYGARKTKF INAHTSRVSC FALSQDGRLI ATASTKGTLV RIYNAAEGNL
301: LQEVRRGADR AEIYSLAFSN NLQYLAVSSD KGTIHVFNLK INVGSTANDK PIPAPDPEVS HISPPLSFIK GNIYYIYGSY TGMRPSKIGS GSLMFPIAFK
401: KTGSFYFPSM AGVLPKYFHS EWSVAQFRLH EGEQYIVAFG HEKNTVSVVG MDGSFYRCQF DPVNGGEMLQ LECYSFLKPS DQP

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.