CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92887	Soybean	cytosol	92.82	92.57
GSMUA_Achr11P...	Banana	cytosol	62.5	78.33
VIT_14s0060g02380.t01	Wine grape	plastid	78.19	69.18
PGSC0003DMT400063510	Potato	nucleus	79.26	67.12
Solyc01g099400.2.1	Tomato	mitochondrion	52.93	62.78
KRH68154	Soybean	cytosol, plastid	67.02	59.57
KRG96415	Soybean	cytosol, plastid	65.96	58.63
KRH50149	Soybean	cytosol, mitochondrion	10.37	57.35
Os01t0934000-01	Rice	plasma membrane	66.49	54.7
Zm00001d042215_P002	Maize	cytosol, extracellular	65.16	54.57
KRH53692	Soybean	plastid	60.9	54.52
KRH64240	Soybean	cytosol, plastid	60.37	54.18
EES04163	Sorghum	cytosol	65.43	53.95
Zm00001d011920_P003	Maize	cytosol	65.43	50.93
TraesCS3A01G453200.1	Wheat	cytosol	65.69	50.61
TraesCS3B01G490900.1	Wheat	nucleus	65.69	50.0
HORVU3Hr1G098020.1	Barley	cytosol, plastid	66.22	49.02
Zm00001d010645_P001	Maize	cytosol	34.04	42.11
GSMUA_Achr8P10070_001	Banana	cytosol	61.97	38.64
Zm00001d015812_P001	Maize	cytosol	14.63	32.16
KRH33489	Soybean	cytosol	11.17	28.77
KRH07770	Soybean	plastid	14.36	25.84
KRH02984	Soybean	cytosol	24.73	25.2
KRH72365	Soybean	cytosol	23.94	24.46

Protein Annotations

EntrezGene:100800215	MapMan:19.3.2.1.3	Gene3D:2.130.10.10	EMBL:ACUP02006565	EnsemblPlantsGene:GLYMA_10G152500	GO:GO:0000422
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006497	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0019538	GO:GO:0019898	GO:GO:0032266	GO:GO:0034045	GO:GO:0034497	GO:GO:0044804
GO:GO:0080025	UniProt:I1LBA7	InterPro:IPR001680	InterPro:IPR015943	EnsemblPlants:KRH33898	ProteinID:KRH33898
ProteinID:KRH33898.1	ProteinID:KRH33899.1	ProteinID:KRH33900.1	PFAM:PF00400	PANTHER:PTHR11227	PANTHER:PTHR11227:SF33
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000233C946	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:38725865..38729474

Molecular Weight (calculated)

41628.5 Da

IEP (calculated)

7.999

GRAVY (calculated)

-0.126

Length

376 amino acids

Sequence
(BLAST)

001: MSQTLGSDEP PQTTDSHTPS LLHLSFNQDS GCFAAATDRG FRIYNCDPFR EIFRHDFGSG GGGVALVHML FRCNILAFVG ASSSSSSSEP RYPPNKVMIW
101: DDHQSRCIGE LSFRSEVKGV RLRRDRIVVV LAHKIFVYNF SDLKVLHQIE TIVNPKGLCD LSHVSATMVL VCPGLQKGQV RVEHYASKRT KFIMAHDSRI
201: ACFALTHDGR LLATASSKGT LVRLFNTLDG SLLQEVRRGA DRAEIYCLAF SPTAQWLAVS SDKGTVHVFN LKVDSGLLGH DRSHGTSEAN PSSPTAVSSL
301: SFFKGVLPKY FSSEWSVAQF RLQEGLQYVV AFGHQKNTVV ILGMDGSFYR CQFDSAAGGE MTQLEYYNFL KAEETF

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.