CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33898	Soybean	nucleus	92.57	92.82
GSMUA_Achr11P...	Banana	cytosol	62.86	79.0
VIT_14s0060g02380.t01	Wine grape	plastid	79.58	70.59
PGSC0003DMT400063510	Potato	nucleus	79.84	67.79
Solyc01g099400.2.1	Tomato	mitochondrion	53.05	63.09
KRH68154	Soybean	cytosol, plastid	68.97	61.47
KRG96415	Soybean	cytosol, plastid	67.9	60.52
KRH50149	Soybean	cytosol, mitochondrion	10.61	58.82
Os01t0934000-01	Rice	plasma membrane	68.17	56.24
KRH53692	Soybean	plastid	62.07	55.71
Zm00001d042215_P002	Maize	cytosol, extracellular	66.31	55.68
KRH64240	Soybean	cytosol, plastid	61.54	55.37
EES04163	Sorghum	cytosol	66.58	55.04
TraesCS3A01G453200.1	Wheat	cytosol	67.64	52.25
Zm00001d011920_P003	Maize	cytosol	66.58	51.97
TraesCS3B01G490900.1	Wheat	nucleus	67.64	51.62
HORVU3Hr1G098020.1	Barley	cytosol, plastid	68.17	50.59
Zm00001d010645_P001	Maize	cytosol	34.75	43.09
GSMUA_Achr8P10070_001	Banana	cytosol	63.13	39.47
Zm00001d015812_P001	Maize	cytosol	15.12	33.33
KRH33489	Soybean	cytosol	10.88	28.08
KRH02984	Soybean	cytosol	25.2	25.75
KRH07770	Soybean	plastid	14.06	25.36
KRH72365	Soybean	cytosol	24.4	25.0

Protein Annotations

EntrezGene:100787427	MapMan:19.3.2.1.3	Gene3D:2.130.10.10	EMBL:ACUP02012770	EnsemblPlantsGene:GLYMA_20G235800	GO:GO:0000422
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006497	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0019538	GO:GO:0019898	GO:GO:0032266	GO:GO:0034045	GO:GO:0034497	GO:GO:0044804
GO:GO:0080025	UniProt:I1NJ08	InterPro:IPR001680	InterPro:IPR015943	EnsemblPlants:KRG92887	ProteinID:KRG92887
ProteinID:KRG92887.1	PFAM:PF00400	PANTHER:PTHR11227	PANTHER:PTHR11227:SF33	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000233DDCB	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:+:46821495..46824593

Molecular Weight (calculated)

41832.0 Da

IEP (calculated)

8.228

GRAVY (calculated)

-0.124

Length

377 amino acids

Sequence
(BLAST)

001: MSQTPPQTLD SDEAPQTTHA TQTPSLLHLS FNQDSGCFAA ATDRGFRIYN CDPFREIFRR DFGPGGGVGL VHMLFRCNIL AFVGGGSSPD PRYPPNKVMI
101: WDDHLSRCIG ELSFRSEVKG VRLRRDRIVV VLAHKIFVYN FADLKVLHQI ETIANPKGLC DLSHVSATMV LVCPGLQKGQ VRVEHYASKR TKFIMAHDSR
201: IACFALTHDG RLLATASSKG TLIRLFNTLD GSLLQEVRRG ADRAEIYSLA FSPTAQWLAV SSDKGTVHVF NLKVDSGLLG HDRSHSTSEA NLASPTAMSS
301: LSFFKGVLPK YFSSEWSVAQ FRLQEGLQYV VAFGHQKNTV VILGMDGSFY RCQFDSAAGG EMTQLEYYNF LKAEETF

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.