Factsheet for PGSC0003DMT400063510

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92887	Soybean	cytosol	67.79	79.84
KRH33898	Soybean	nucleus	67.12	79.26
GSMUA_Achr11P...	Banana	cytosol	52.7	78.0
Solyc01g099400.2.1	Tomato	mitochondrion	54.95	76.97
VIT_14s0060g02380.t01	Wine grape	plastid	70.05	73.18
Os01t0934000-01	Rice	plasma membrane	60.81	59.08
Zm00001d042215_P002	Maize	cytosol, extracellular	59.68	59.02
EES04163	Sorghum	cytosol	59.68	58.11
PGSC0003DMT400038462	Potato	cytosol	54.05	57.28
PGSC0003DMT400076107	Potato	cytosol	54.73	56.78
Zm00001d011920_P003	Maize	cytosol	60.14	55.28
TraesCS3A01G453200.1	Wheat	cytosol	58.56	53.28
TraesCS3B01G490900.1	Wheat	nucleus	58.78	52.83
HORVU3Hr1G098020.1	Barley	cytosol, plastid	59.23	51.77
Zm00001d010645_P001	Maize	cytosol	33.78	49.34
Zm00001d015812_P001	Maize	cytosol	15.99	41.52
GSMUA_Achr8P10070_001	Banana	cytosol	56.08	41.29
PGSC0003DMT400028996	Potato	cytosol	22.75	27.67

Protein Annotations

EntrezGene:102597713	MapMan:19.3.2.1.3	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1CAS2	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400024704
PGSC:PGSC0003DMG400024704	EnsemblPlants:PGSC0003DMT400063510	PFscan:PS50294	PANTHER:PTHR11227	PANTHER:PTHR11227:SF33	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000295C687	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_006344646.1	SEG:seg	:	:	:	:

Description

WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024704]

Coordinates

chr1:+:77203393..77207784

Molecular Weight (calculated)

48539.3 Da

IEP (calculated)

6.670

GRAVY (calculated)

-0.213

Length

444 amino acids

Sequence
(BLAST)

001: MTSTLSASSA WPESPFVPPP MSENPPDSDD RSSLSDLSDI SAAVTDAVDD DERRSQTSVT SPTNTAATSV QNVNPSPNSI SLPVDSSTPN VLYLSFNQDY
101: GCFAAGTDRG FRIYNCDPLR EIFRRDFTGN SNGGGGIGVV QMLFRCNILA LVGGGPEPQY PLNKVMIWDD HQSRCIGELS FRSEVKSVRL RRDRIVVVLA
201: QKIFVYNFSD LKLLHQIETV ANPKGLCEVS QVSGSMVLVC PGLQKGQVRV EHYASKRTKF IMAHDSRIVC FALTNDGRLL ATSSSKGTLV RIYNTLDGSL
301: VQEVRRGADR AEIYSLAFSP TAQWLAVSSD KGTVHVFNLK VDSAALGVDR PRGASESNAT SPSAGSHLSF IRGVLPKYFS SEWSVAQFRL QEGLQHIVAF
401: GHQKNTVVIL GMDGSFYRCQ YDAATGGEMT LLEHHSFLKS EENF

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.