Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g006010.2.1 | Tomato | cytosol | 96.18 | 96.18 |
| PGSC0003DMT400076107 | Potato | cytosol | 62.53 | 61.22 |
| PGSC0003DMT400063510 | Potato | nucleus | 57.28 | 54.05 |
| PGSC0003DMT400028996 | Potato | cytosol | 26.01 | 29.86 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400038462 | EnsemblPlantsGene:PGSC0003DMG401014844 | EntrezGene:102599304 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom_sf |
| PANTHER:PTHR11227 | PANTHER:PTHR11227:SF33 | PFAM:PF00400 | PGSC:PGSC0003DMG401014844 | RefSeq:XP_006357021.1 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI000294B2D7 | UniProt:M1B6W8 | MapMan:19.3.2.1.3 | : | : |
Description
WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG401014844]
Coordinates
chr8:-:2664312..2670859
Molecular Weight (calculated)
46752.8 Da
IEP (calculated)
8.223
GRAVY (calculated)
-0.217
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVSPLPPP VQHANTSSSP MLQPCLEQLD EQHKQQLQTQ EAAVVQIDND PKQSHLNPCP TQGFIDKSIS TLYRVSFNQN GSCFAIGTDC GISVYSCDPY
101: CEMFRRYFDN GGGIGIVEML FRSNILVFVG NGDNPQYHRN KVVIWDDHQN RCIGELRFRS AVRGVRLRRD CIVVILEQKI FIYNFADLKL VHQIETISNP
201: KGLCEISQTA VSPVLVCPGL QNGQVRVDHF TSKRTKFIFA HDSRIASFAL SHEGNVLATA SIKGTLIRIF STQDGTLLQE VRRGADRAEI HSVSFDPTAQ
301: WLAVSSDKGT VHVFRLKVNL GNQDKTRTTP NFRGTLAAAS SPLSFIKGVL PKYFSSEWSV AQFRFPGDSE FIVSFGHEKN TLLILGLDGS FIRCKFDPSS
401: GKEMTQMEIH NFLKSEKAS
101: CEMFRRYFDN GGGIGIVEML FRSNILVFVG NGDNPQYHRN KVVIWDDHQN RCIGELRFRS AVRGVRLRRD CIVVILEQKI FIYNFADLKL VHQIETISNP
201: KGLCEISQTA VSPVLVCPGL QNGQVRVDHF TSKRTKFIFA HDSRIASFAL SHEGNVLATA SIKGTLIRIF STQDGTLLQE VRRGADRAEI HSVSFDPTAQ
301: WLAVSSDKGT VHVFRLKVNL GNQDKTRTTP NFRGTLAAAS SPLSFIKGVL PKYFSSEWSV AQFRFPGDSE FIVSFGHEKN TLLILGLDGS FIRCKFDPSS
401: GKEMTQMEIH NFLKSEKAS
001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF
Arabidopsis Description
ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.