Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400038462 | Potato | cytosol | 96.18 | 96.18 |
| Solyc08g074340.1.1 | Tomato | cytosol, extracellular | 30.55 | 63.68 |
| Solyc01g099400.2.1 | Tomato | mitochondrion | 38.9 | 51.42 |
| Solyc04g076720.1.1 | Tomato | plastid | 29.83 | 50.81 |
| Solyc06g048510.2.1 | Tomato | cytosol | 49.4 | 49.76 |
| Solyc07g006120.2.1 | Tomato | cytosol | 26.01 | 29.86 |
Protein Annotations
| MapMan:19.3.2.1.3 | Gene3D:2.130.10.10 | GO:GO:0000422 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 |
| GO:GO:0006497 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009056 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0019898 | GO:GO:0032266 |
| GO:GO:0034045 | GO:GO:0034497 | GO:GO:0044804 | GO:GO:0080025 | InterPro:IPR001680 | InterPro:IPR015943 |
| UniProt:K4CI90 | PFAM:PF00400 | PANTHER:PTHR11227 | PANTHER:PTHR11227:SF33 | SMART:SM00320 | SUPFAM:SSF50978 |
| EnsemblPlantsGene:Solyc08g006010.2 | EnsemblPlants:Solyc08g006010.2.1 | UniParc:UPI000276BC63 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom_sf |
Description
No Description!
Coordinates
chr8:+:775557..780071
Molecular Weight (calculated)
46835.1 Da
IEP (calculated)
8.694
GRAVY (calculated)
-0.237
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVSPLPPP VQHPNTSSSP MLQAFLEQLD EQHKKQLQTQ EAAVVQKDND PKQSHLNPCP THGFINRSIS TLYRVSFNQN GSCFAIGTDC GISVYSCDPY
101: CEMFRRYFDN GGGIGIVEML FRSNILVFVG NGDNPQYHRN KVIIWDDHQN RCIGELRFRS AVRGVRLRRD CIVVILEQKI FIYNFADLKL VHQIETMSNP
201: KGLCEISQTA VSPVLVCPGL QNGQVRVDQF TSKRTKFIFA HDSRIASFAL SHEGNVLATA STKGTLIRIF STQDGTLLQE VRRGADRAEI HSVSFDPAAQ
301: WLAVSSDKGT VHVFRLKVNL GNQDKTRTTP NFRGTLAAAS SPLSFIKGVL PKYFSSEWSV AQFRLPGDSE FIVTFGHEKN TLLILGLDGS FIRCKFDPSS
401: GKEMTQMEIH NFLKSEKAL
101: CEMFRRYFDN GGGIGIVEML FRSNILVFVG NGDNPQYHRN KVIIWDDHQN RCIGELRFRS AVRGVRLRRD CIVVILEQKI FIYNFADLKL VHQIETMSNP
201: KGLCEISQTA VSPVLVCPGL QNGQVRVDQF TSKRTKFIFA HDSRIASFAL SHEGNVLATA STKGTLIRIF STQDGTLLQE VRRGADRAEI HSVSFDPAAQ
301: WLAVSSDKGT VHVFRLKVNL GNQDKTRTTP NFRGTLAAAS SPLSFIKGVL PKYFSSEWSV AQFRLPGDSE FIVTFGHEKN TLLILGLDGS FIRCKFDPSS
401: GKEMTQMEIH NFLKSEKAL
001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF
Arabidopsis Description
ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.