Factsheet for Solyc07g006120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028996	Potato	cytosol	98.08	98.08
VIT_11s0037g00970.t01	Wine grape	cytosol	55.89	77.57
VIT_03s0091g00190.t01	Wine grape	plastid	19.45	75.53
KRH02984	Soybean	cytosol	67.95	67.21
AT4G30510.1	Thale cress	cytosol	67.12	66.94
CDY39210	Canola	cytosol, plastid	67.12	66.76
Bra024070.1-P	Field mustard	plastid	66.85	66.67
CDX72248	Canola	plastid	66.85	66.48
KRH33489	Soybean	cytosol	26.58	66.44
KRH72365	Soybean	cytosol	66.85	66.3
KRH07770	Soybean	plastid	37.53	65.55
GSMUA_Achr9P13430_001	Banana	plastid	60.55	60.05
KXG31257	Sorghum	cytosol	55.07	54.18
Zm00001d018355_P005	Maize	cytosol, plastid	54.79	53.91
TraesCS6B01G386200.1	Wheat	cytosol, mitochondrion, plastid	53.7	52.55
TraesCS6D01G335900.1	Wheat	cytosol, mitochondrion, plastid	53.15	52.01
TraesCS6A01G353600.1	Wheat	cytosol, mitochondrion, plastid	52.88	51.74
Os02t0791800-01	Rice	cytosol	52.88	51.6
HORVU6Hr1G084430.3	Barley	cytosol	53.42	43.72
Solyc08g006010.2.1	Tomato	cytosol	29.86	26.01
Solyc08g074340.1.1	Tomato	cytosol, extracellular	13.97	25.37
Solyc06g048510.2.1	Tomato	cytosol	27.67	24.28
Solyc01g099400.2.1	Tomato	mitochondrion	18.9	21.77
Solyc04g076720.1.1	Tomato	plastid	14.25	21.14

Protein Annotations

MapMan:19.3.2.1.3	Gene3D:2.130.10.10	GO:GO:0000422	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464
GO:GO:0006497	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0019538	GO:GO:0019898
GO:GO:0032266	GO:GO:0034045	GO:GO:0034497	GO:GO:0044804	GO:GO:0080025	InterPro:IPR001680
InterPro:IPR015943	UniProt:K4CB83	PANTHER:PTHR11227	PANTHER:PTHR11227:SF17	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:Solyc07g006120.2	EnsemblPlants:Solyc07g006120.2.1	TMHMM:TMhelix	UniParc:UPI000276C3AD	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

Autophagy-related protein 18b [Source:Projected from Arabidopsis thaliana (AT4G30510) UniProtKB/Swiss-Prot;Acc:Q8H1Q8]

Coordinates

chr7:+:973639..979759

Molecular Weight (calculated)

39714.8 Da

IEP (calculated)

7.295

GRAVY (calculated)

0.126

Length

365 amino acids

Sequence
(BLAST)

001: MANQPSSCPI LCASFNQDNS CFAIGTREGF KIFDCNTGRL LYERVAGAFI IVEMLFSSSL LAIVGAGEQP SLSPRRLCLF NTVTGVALEE LNFLTSILAV
101: RMNKKRLIVI LQEKTFIYDI NSLKILDTID TVPNPKGLCA FSPSLDGSFL ALPASTTKGS LLVYNVSDLR LHCEIDAHRS PLAVLSLSSG GTHIATASEQ
201: GTMIRIHLVS DATKSYSFRR GSYSSNIFSL SFAPATELPD ILLATSSSGS VHVFSLGSPP NQRSSGLLGS IKVPHTINDA LDPAQHCILH HAVPAGVRSN
301: TLIRKIEKFE ETATPEHVVL RATIPMITYG GYFLEYVYNV NHQNKSSWTL EREFNLLSAE TSSLP

Best Arabidopsis Sequence Match ( AT4G30510.1 )
(BLAST)

001: MANLSSLPSP IYCVSFNQDN SGFAISWKDS FKIFDSTTGR LCYERAAGAF VIVEMLYSSD LLAIVGAGEQ ASLSPRRLCL FKTTTGLPLR ELNFLTSILA
101: VRMNKKRLVV VLLEKTFVYD LNTLVMLDTI DTVPNPKGLS AFSPSLEGCY LAVPASTTKG SVLVYNVMDL QSHSEIDAHR SPLAAIALSS NGMYIATGSE
201: QGTLIRVHLV SEATKSYSFR RGTYPSTIYS LSFGPSTQLP DILIATSSSG SIHAFSLSLA INQRSKRSTS FLGSVLPDSV SDALDPAHHH VLQNAVSSGI
301: RSYAVVRKID KLEGTSSPSH FTSLRATVSV ITYNGYFQEY TLSINNKNES LWTLEREFNL FSITTG

Arabidopsis Description

ATG18BAutophagy-related protein 18b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Q8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.