Factsheet for GSMUA_Achr9P13430_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0091g00190.t01	Wine grape	plastid	18.75	73.4
VIT_11s0037g00970.t01	Wine grape	cytosol	52.17	73.0
KRH33489	Soybean	cytosol	25.0	63.01
Zm00001d018355_P005	Maize	cytosol, plastid	63.32	62.8
KRH72365	Soybean	cytosol	62.5	62.5
KRH02984	Soybean	cytosol	62.5	62.33
KRH07770	Soybean	plastid	35.05	61.72
KXG31257	Sorghum	cytosol	61.96	61.46
AT4G30510.1	Thale cress	cytosol	60.87	61.2
PGSC0003DMT400028996	Potato	cytosol	60.05	60.55
Solyc07g006120.2.1	Tomato	cytosol	60.05	60.55
Bra024070.1-P	Field mustard	plastid	60.05	60.38
CDY39210	Canola	cytosol, plastid	60.05	60.22
CDX72248	Canola	plastid	60.05	60.22
TraesCS6B01G386200.1	Wheat	cytosol, mitochondrion, plastid	60.05	59.25
TraesCS6D01G335900.1	Wheat	cytosol, mitochondrion, plastid	60.05	59.25
Os02t0791800-01	Rice	cytosol	60.05	59.09
TraesCS6A01G353600.1	Wheat	cytosol, mitochondrion, plastid	59.78	58.98
HORVU6Hr1G084430.3	Barley	cytosol	60.05	49.55
GSMUA_Achr11P...	Banana	cytosol	22.28	27.33
GSMUA_Achr10P...	Banana	cytosol, plastid	26.9	23.68
GSMUA_AchrUn_...	Banana	cytosol, plastid	25.82	22.46
GSMUA_Achr8P10070_001	Banana	cytosol	21.2	12.94

Protein Annotations

EnsemblPlants:GSMUA_Achr9P13430_001	EnsemblPlants:GSMUA_Achr9T13430_001	EnsemblPlantsGene:GSMUA_Achr9G13430_001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf
PANTHER:PTHR11227	PANTHER:PTHR11227:SF17	SEG:seg	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000294B583
UniProt:M0U001	MapMan:19.3.2.1.3	:	:	:	:

Description

atATG18b, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G13430_001]

Coordinates

chr9:+:8718536..8727334

Molecular Weight (calculated)

40042.9 Da

IEP (calculated)

8.770

GRAVY (calculated)

0.103

Length

368 amino acids

Sequence
(BLAST)

001: MASSSRASPS ASPVLCASFN QDNSWFSVGT KDGFKLFDAR TGRLCFERAV GAFNIVEMLF STNLLAIVGA GEQPSLSPRK LCLFNTLTGS ALRELNFLTS
101: IVAVRLNRKR LIVVLRDKTY IYDLNSLVIL ETIDTVPNNK GLCAFSPGSE SCYLALPAST TKGSVLIYNT VALQSVCQID AHRSPLVAMI FSSSGTYLAT
201: ASQQGTIIRV HLVSQATESY SFRRGTYPST IYSLSFGPCA DVPEVLVATS SSGSLHAFLL GPAIKQRRKP NRVIGSLIPD TLSDAFDHAY HHILHNVVPA
301: CVKSHVRIHS IDNISSAPGV SGFRASIFII TRNGYFREYS LNVTKSNECS WSLEREVNLL DTVSNDPN

Best Arabidopsis Sequence Match ( AT4G30510.1 )
(BLAST)

001: MANLSSLPSP IYCVSFNQDN SGFAISWKDS FKIFDSTTGR LCYERAAGAF VIVEMLYSSD LLAIVGAGEQ ASLSPRRLCL FKTTTGLPLR ELNFLTSILA
101: VRMNKKRLVV VLLEKTFVYD LNTLVMLDTI DTVPNPKGLS AFSPSLEGCY LAVPASTTKG SVLVYNVMDL QSHSEIDAHR SPLAAIALSS NGMYIATGSE
201: QGTLIRVHLV SEATKSYSFR RGTYPSTIYS LSFGPSTQLP DILIATSSSG SIHAFSLSLA INQRSKRSTS FLGSVLPDSV SDALDPAHHH VLQNAVSSGI
301: RSYAVVRKID KLEGTSSPSH FTSLRATVSV ITYNGYFQEY TLSINNKNES LWTLEREFNL FSITTG

Arabidopsis Description

ATG18BAutophagy-related protein 18b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Q8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.