CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0091g00190.t01	Wine grape	plastid	40.41	62.77
VIT_11s0037g00970.t01	Wine grape	cytosol	65.75	36.5
KRH02984	Soybean	cytosol	84.93	33.6
KRH72365	Soybean	cytosol	81.51	32.34
KRH07770	Soybean	plastid	45.89	32.06
Solyc07g006120.2.1	Tomato	cytosol	66.44	26.58
PGSC0003DMT400028996	Potato	cytosol	66.44	26.58
GSMUA_Achr9P13430_001	Banana	plastid	63.01	25.0
AT4G30510.1	Thale cress	cytosol	61.64	24.59
Bra024070.1-P	Field mustard	plastid	59.59	23.77
CDX72248	Canola	plastid	59.59	23.71
CDY39210	Canola	cytosol, plastid	59.59	23.71
Zm00001d018355_P005	Maize	cytosol, plastid	58.22	22.91
KXG31257	Sorghum	cytosol	57.53	22.64
TraesCS6B01G386200.1	Wheat	cytosol, mitochondrion, plastid	50.68	19.84
TraesCS6D01G335900.1	Wheat	cytosol, mitochondrion, plastid	50.68	19.84
TraesCS6A01G353600.1	Wheat	cytosol, mitochondrion, plastid	50.0	19.57
Os02t0791800-01	Rice	cytosol	48.63	18.98
HORVU6Hr1G084430.3	Barley	cytosol	50.68	16.59
KRH33898	Soybean	nucleus	28.77	11.17
KRG92887	Soybean	cytosol	28.08	10.88
KRH68154	Soybean	cytosol, plastid	30.14	10.4
KRG96415	Soybean	cytosol, plastid	30.14	10.4
KRH64240	Soybean	cytosol, plastid	29.45	10.26
KRH53692	Soybean	plastid	29.45	10.24
KRH50149	Soybean	cytosol, mitochondrion	1.37	2.94

Protein Annotations

MapMan:35.1	EMBL:ACUP02006509	EnsemblPlantsGene:GLYMA_10G126200	GO:GO:0000422	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464
GO:GO:0006497	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0019538	GO:GO:0019898	GO:GO:0032266
GO:GO:0034045	GO:GO:0034497	GO:GO:0044804	GO:GO:0080025	UniProt:K7LJ17	EnsemblPlants:KRH33489
ProteinID:KRH33489	ProteinID:KRH33489.1	PANTHER:PTHR11227	PANTHER:PTHR11227:SF17	SUPFAM:SSF69322	UniParc:UPI000295B4E2

Description

hypothetical protein

Coordinates

chr10:-:33430366..33432117

Molecular Weight (calculated)

16188.7 Da

IEP (calculated)

7.847

GRAVY (calculated)

0.233

Length

146 amino acids

Sequence
(BLAST)

001: MANHSSLPSL LCASFNQDHS YFVVGTKDGV RIFDTNTGRL CYQKIKFTVR AFVIAEMLFS SSLLAIIRAG DQPSLSPCRL CLFNTTTGAA IRELNFLTSI
101: LDVCMNRQRL IVILQDKAYA YEINSLIILD TIDTMPNIKG EAGTNT

Best Arabidopsis Sequence Match ( AT4G30510.1 )
(BLAST)

001: MANLSSLPSP IYCVSFNQDN SGFAISWKDS FKIFDSTTGR LCYERAAGAF VIVEMLYSSD LLAIVGAGEQ ASLSPRRLCL FKTTTGLPLR ELNFLTSILA
101: VRMNKKRLVV VLLEKTFVYD LNTLVMLDTI DTVPNPKGLS AFSPSLEGCY LAVPASTTKG SVLVYNVMDL QSHSEIDAHR SPLAAIALSS NGMYIATGSE
201: QGTLIRVHLV SEATKSYSFR RGTYPSTIYS LSFGPSTQLP DILIATSSSG SIHAFSLSLA INQRSKRSTS FLGSVLPDSV SDALDPAHHH VLQNAVSSGI
301: RSYAVVRKID KLEGTSSPSH FTSLRATVSV ITYNGYFQEY TLSINNKNES LWTLEREFNL FSITTG

Arabidopsis Description

ATG18BAutophagy-related protein 18b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Q8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.