CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98195
KRH17125
KRH30155
KRH72765

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62770.1	KRG98195	AT2G38470.1	21395886
AT3G62770.1	KRH17125	AT2G38470.1	21395886
AT3G62770.1	KRH30155	AT2G38470.1	21395886
AT3G62770.1	KRH72765	AT2G38470.1	21395886

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68154	Soybean	cytosol, plastid	94.09	94.09
KRG92887	Soybean	cytosol	60.52	67.9
Bra014393.1-P	Field mustard	cytosol	64.07	66.26
KRH33898	Soybean	nucleus	58.63	65.96
CDX89148	Canola	cytosol	64.54	65.78
VIT_07s0104g01780.t01	Wine grape	plastid	68.09	65.6
VIT_07s0104g01790.t01	Wine grape	plastid	65.72	65.57
CDX93962	Canola	cytosol	64.3	64.92
AT3G62770.1	Thale cress	nucleus, plastid	65.01	64.71
KRH50149	Soybean	cytosol, mitochondrion	10.4	64.71
CDX67903	Canola	nucleus	61.7	64.6
CDX76661	Canola	plastid	64.54	64.39
Bra003509.1-P	Field mustard	nucleus	63.12	64.18
CDY25117	Canola	cytosol, plastid	64.78	63.87
CDY11447	Canola	nucleus	64.07	62.73
Bra007700.1-P	Field mustard	nucleus, plastid	63.59	62.56
KRH64240	Soybean	cytosol, plastid	53.19	53.7
KRH53692	Soybean	plastid	53.19	53.57
KRH33489	Soybean	cytosol	10.4	30.14
KRH02984	Soybean	cytosol	24.59	28.18
KRH07770	Soybean	plastid	13.71	27.75
KRH72365	Soybean	cytosol	23.88	27.45

Protein Annotations

EntrezGene:100807695	MapMan:19.3.2.1.3	Gene3D:2.130.10.10	EMBL:ACUP02012154	EnsemblPlantsGene:GLYMA_19G209200	GO:GO:0000422
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006497	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0019538	GO:GO:0019898	GO:GO:0032266	GO:GO:0034045	GO:GO:0034497	GO:GO:0044804
GO:GO:0080025	UniProt:I1NB39	InterPro:IPR001680	InterPro:IPR015943	EnsemblPlants:KRG96415	ProteinID:KRG96415
ProteinID:KRG96415.1	PFAM:PF00400	PANTHER:PTHR11227	PANTHER:PTHR11227:SF33	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000233E465	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:+:46392639..46395967

Molecular Weight (calculated)

46667.4 Da

IEP (calculated)

6.974

GRAVY (calculated)

-0.268

Length

423 amino acids

Sequence
(BLAST)

001: MATLSACASP PWPNPNSPNS NPDPNFLPDQ SQTLDFDSLM PPQPESPPPH HHHSPDASPP ESSPSLPPPS LLYLSFNQDQ ACFAAAADSG FRIYNCDPFR
101: ELFRRDFDGG GIGHVEMLFL CNIFALVGGG PNPQYPPNKV MIWDDHQGHC IGELSFRAAV RGVRLRRDRI IVVVEQKIFV YNFADLKLVH QIETVPNPKG
201: LCAVSQLSDS LVLACPGLHK GQIRVEHYAQ KKTKFISAHD SRIACFALTL DGQLIATAST KGTLIRIFDT DHGTLLQEVR RGANTAEICS LAFSSTAQWL
301: AVSSDKGTVH VFSLKKHSNI PELEKTQSSS NSEAAVTLSN SSRSFIKLKG VLPKYFNSEW SVAQFHLQEG SHYTVAFGLQ KNTVIILGMD GSFYRCQFDP
401: VRGGEMTQLE HRNFLKPEPE TAL

Best Arabidopsis Sequence Match ( AT2G40810.1 )
(BLAST)

001: MSSTVSNPQG ILQPGSFLLP ESESMKKEEA ELVSVCWNQD SSCFAAGTSH GFRIYNCEPF KETFRRELKD GGFKIVEMLF RSNILALVGG GPNSQYPSSK
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP

Arabidopsis Description

ATG18CAutophagy-related protein 18c [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.