Factsheet for Bra014393.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000064.1-P
Bra005104.1-P
Bra017117.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62770.1	Bra000064.1-P	AT2G38470.1	21395886
AT3G62770.1	Bra005104.1-P	AT2G38470.1	21395886
AT3G62770.1	Bra017117.1-P	AT2G38470.1	21395886

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89148	Canola	cytosol	99.02	97.59
CDX93962	Canola	cytosol	97.56	95.23
Bra003509.1-P	Field mustard	nucleus	92.18	90.62
AT3G62770.1	Thale cress	nucleus, plastid	91.44	88.0
Bra007700.1-P	Field mustard	nucleus, plastid	89.0	84.65
VIT_07s0104g01790.t01	Wine grape	plastid	71.15	68.63
VIT_07s0104g01780.t01	Wine grape	plastid	73.59	68.56
KRH68154	Soybean	cytosol, plastid	67.73	65.48
KRG96415	Soybean	cytosol, plastid	66.26	64.07
Bra016968.1-P	Field mustard	cytosol, plastid	53.3	53.43
KRH50149	Soybean	cytosol, mitochondrion	8.8	52.94
Bra005844.1-P	Field mustard	cytosol	42.3	45.89
Bra024070.1-P	Field mustard	plastid	25.18	28.14

Protein Annotations

EnsemblPlants:Bra014393.1	EnsemblPlants:Bra014393.1-P	EnsemblPlantsGene:Bra014393	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf
PANTHER:PTHR11227	PANTHER:PTHR11227:SF33	PFAM:PF00400	SEG:seg	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0002545440	UniProt:M4DD25	MapMan:19.3.2.1.3	:	:	:

Description

AT3G62770 (E=8e-179) AtATG18a | AtATG18a

Coordinates

chrA04:+:288895..290478

Molecular Weight (calculated)

45075.5 Da

IEP (calculated)

7.543

GRAVY (calculated)

-0.229

Length

409 amino acids

Sequence
(BLAST)

001: MATVSSASPW PIDSDSTVPS QHRDPGDDTE SLDSFSSMSL NSEEATHNSD QTPAPPPPSL LHLSFNQDHA CFAVGTDRGF RILNCDPFRE IFRRDFDRGG
101: GVAVVEMLFR CNILALVGGG PDPQYPPNKV MIWDDHQSRC IGELSFRSDV RSVRLRRDRI IVVLEQKIFV YNFADLKLMH QIETIANPKG LCAVSQGAGS
201: MVLVCPGLQK GQVRIEHYAS KRTKFVMAHD SRIACFALTQ DGHLLATASS KGTLVRIFNT VDGTLRQEVR RGADRAEIYS LAFSSNAQWL AVSSDKGTVH
301: VFGLKGNSGA QVKDTPRIAS DLTRTSSSPS SSLSLFKGVL PKYFSSEWSV AQFRLVEGTQ YIVAFGHQKN TVVILGMDGS FYRCQFDPVN GGEMSQLEYH
401: NCLKPPSVF

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.