Factsheet for AT3G62770.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014393.1-P	Field mustard	cytosol	88.0	91.44
CDX89148	Canola	cytosol	88.94	91.08
CDX93962	Canola	cytosol	88.94	90.21
CDX67903	Canola	nucleus	84.94	89.36
Bra003509.1-P	Field mustard	nucleus	87.06	88.94
CDY25117	Canola	cytosol, plastid	88.94	88.11
CDX76661	Canola	plastid	87.29	87.5
CDY11447	Canola	nucleus	86.35	84.95
Bra007700.1-P	Field mustard	nucleus, plastid	85.41	84.42
VIT_07s0104g01780.t01	Wine grape	plastid	71.76	69.48
VIT_07s0104g01790.t01	Wine grape	plastid	68.0	68.16
KRH68154	Soybean	cytosol, plastid	66.12	66.43
KRG96415	Soybean	cytosol, plastid	64.71	65.01
AT3G56440.1	Thale cress	cytosol	51.29	55.75
AT2G40810.1	Thale cress	cytosol	51.53	55.73
KRH50149	Soybean	cytosol, mitochondrion	8.47	52.94
AT5G05150.1	Thale cress	cytosol	38.82	44.12
AT4G30510.1	Thale cress	cytosol	23.53	27.32

Protein Annotations

MapMan:19.3.2.1.3	Gene3D:2.130.10.10	EntrezGene:825452	UniProt:A0A178V9Z7	ProteinID:AEE80389.1	ArrayExpress:AT3G62770
EnsemblPlantsGene:AT3G62770	RefSeq:AT3G62770	TAIR:AT3G62770	RefSeq:AT3G62770-TAIR-G	EnsemblPlants:AT3G62770.1	TAIR:AT3G62770.1
EMBL:AY039545	EMBL:AY059169	Unigene:At.4833	Symbol:AtATG18a	ProteinID:CAB83127.1	GO:GO:0000422
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005829	GO:GO:0006464
GO:GO:0006497	GO:GO:0006810	GO:GO:0006914	GO:GO:0006950	GO:GO:0006970	GO:GO:0006979
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009056	GO:GO:0009058
GO:GO:0009414	GO:GO:0009605	GO:GO:0009607	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987
GO:GO:0009991	GO:GO:0010150	GO:GO:0010508	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0019538	GO:GO:0019898	GO:GO:0032266	GO:GO:0034045	GO:GO:0034497	GO:GO:0042594
GO:GO:0044804	GO:GO:0050832	GO:GO:0080025	InterPro:IPR001680	InterPro:IPR015943	RefSeq:NP_567132.4
ProteinID:OAP01803.1	PFAM:PF00400	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PANTHER:PTHR11227
PANTHER:PTHR11227:SF33	UniProt:Q93VB2	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00000A122A	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]

Coordinates

chr3:-:23218610..23221243

Molecular Weight (calculated)

46802.4 Da

IEP (calculated)

7.523

GRAVY (calculated)

-0.274

Length

425 amino acids

Sequence
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.