Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06959 | Canola | cytosol, plastid | 89.57 | 86.27 |
| Bra016968.1-P | Field mustard | cytosol, plastid | 89.31 | 86.03 |
| CDY14745 | Canola | cytosol, plastid | 89.06 | 85.78 |
| AT3G56440.1 | Thale cress | cytosol | 81.42 | 81.84 |
| KRH64240 | Soybean | cytosol, plastid | 74.05 | 69.45 |
| KRH53692 | Soybean | plastid | 74.05 | 69.29 |
| VIT_13s0067g00170.t01 | Wine grape | cytosol, plastid | 72.01 | 69.02 |
| Solyc06g048510.2.1 | Tomato | cytosol | 73.03 | 68.99 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 70.74 | 66.51 |
| OQU86240 | Sorghum | cytosol | 70.23 | 65.71 |
| Zm00001d039703_P001 | Maize | cytosol | 69.47 | 65.47 |
| Os01t0168500-01 | Rice | cytosol | 68.96 | 64.99 |
| TraesCS3D01G095500.1 | Wheat | cytosol | 68.7 | 64.75 |
| TraesCS3B01G110900.1 | Wheat | cytosol | 68.7 | 64.75 |
| HORVU3Hr1G017150.1 | Barley | cytosol | 68.45 | 64.51 |
| TraesCS3A01G095300.1 | Wheat | cytosol | 68.45 | 64.51 |
| Zm00001d008691_P001 | Maize | cytosol | 68.45 | 61.84 |
| TraesCS1D01G114300.1 | Wheat | cytosol | 57.25 | 58.44 |
| TraesCS1B01G132900.1 | Wheat | cytosol | 57.0 | 58.18 |
| TraesCS1A01G112700.1 | Wheat | cytosol | 56.74 | 57.92 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 59.8 | 55.56 |
| Os05t0169200-01 | Rice | cytosol | 53.44 | 54.97 |
| AT3G62770.1 | Thale cress | nucleus, plastid | 55.73 | 51.53 |
| HORVU3Hr1G017140.1 | Barley | extracellular, plasma membrane | 8.91 | 50.72 |
| AT5G05150.1 | Thale cress | cytosol | 47.07 | 49.47 |
| KXG21420 | Sorghum | peroxisome | 46.31 | 45.61 |
| AT4G30510.1 | Thale cress | cytosol | 24.43 | 26.23 |
Protein Annotations
| MapMan:19.3.2.1.3 | Gene3D:2.130.10.10 | EntrezGene:818678 | ProteinID:AAB86441.1 | ProteinID:AEC09882.1 | ProteinID:AEC09883.1 |
| EMBL:AK117701 | ArrayExpress:AT2G40810 | EnsemblPlantsGene:AT2G40810 | RefSeq:AT2G40810 | TAIR:AT2G40810 | RefSeq:AT2G40810-TAIR-G |
| EnsemblPlants:AT2G40810.1 | TAIR:AT2G40810.1 | Symbol:ATATG18C | Unigene:At.42909 | EMBL:BT028913 | GO:GO:0000422 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0006497 |
| GO:GO:0006810 | GO:GO:0006914 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009056 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019538 |
| GO:GO:0019898 | GO:GO:0032266 | GO:GO:0034045 | GO:GO:0034497 | GO:GO:0044804 | GO:GO:0080025 |
| InterPro:IPR001680 | InterPro:IPR015943 | RefSeq:NP_181613.2 | RefSeq:NP_973650.1 | PFAM:PF00400 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR11227 | PANTHER:PTHR11227:SF45 | UniProt:Q8GYD7 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI00000ADDF4 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
ATG18CAutophagy-related protein 18c [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD7]
Coordinates
chr2:+:17032412..17034600
Molecular Weight (calculated)
43834.4 Da
IEP (calculated)
7.071
GRAVY (calculated)
-0.132
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTVSNPQG ILQPGSFLLP ESESMKKEEA ELVSVCWNQD SSCFAAGTSH GFRIYNCEPF KETFRRELKD GGFKIVEMLF RSNILALVGG GPNSQYPSSK
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.