Factsheet for Zm00001d039703_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU86240	Sorghum	cytosol	95.92	95.24
Os01t0168500-01	Rice	cytosol	88.49	88.49
Zm00001d008691_P001	Maize	cytosol	90.89	87.13
TraesCS3D01G095500.1	Wheat	cytosol	87.05	87.05
HORVU3Hr1G017150.1	Barley	cytosol	87.05	87.05
TraesCS3B01G110900.1	Wheat	cytosol	86.57	86.57
TraesCS3A01G095300.1	Wheat	cytosol	86.57	86.57
GSMUA_Achr10P...	Banana	cytosol, plastid	73.86	73.68
HORVU3Hr1G017140.1	Barley	extracellular, plasma membrane	11.75	71.01
KRH64240	Soybean	cytosol, plastid	70.74	70.41
CDY27213	Canola	cytosol	64.99	70.03
CDX72134	Canola	cytosol	64.75	69.77
CDX72135	Canola	cytosol	64.75	69.77
AT3G56440.1	Thale cress	cytosol	65.23	69.57
KRH53692	Soybean	plastid	70.02	69.52
AT2G40810.1	Thale cress	cytosol	65.47	69.47
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	67.87	69.02
Solyc06g048510.2.1	Tomato	cytosol	68.11	68.27
Bra016968.1-P	Field mustard	cytosol, plastid	65.47	66.91
CDY06959	Canola	cytosol, plastid	64.99	66.42
CDY14745	Canola	cytosol, plastid	64.75	66.18
GSMUA_AchrUn_...	Banana	cytosol, plastid	60.91	60.05
Zm00001d042215_P002	Maize	cytosol, extracellular	53.72	49.89
Zm00001d011920_P003	Maize	cytosol	54.44	47.0
Zm00001d010645_P001	Maize	cytosol	30.94	42.43
Zm00001d015812_P001	Maize	cytosol	13.43	32.75
Zm00001d018355_P005	Maize	cytosol, plastid	24.46	27.49

Protein Annotations

EMBL:BT085823	EnsemblPlants:Zm00001d039703_P001	EnsemblPlants:Zm00001d039703_T001	EnsemblPlantsGene:Zm00001d039703	EntrezGene:100501634	Gene3D:2.130.10.10
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227	PANTHER:PTHR11227:SF45	PFAM:PF00400	ProteinID:ONM29779.1
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0001A4C8D9	UniProt:C4J4S6	MapMan:19.3.2.1.3	:

Description

autophagy18cAutophagy-related protein 18c

Coordinates

chr3:-:12596468..12600760

Molecular Weight (calculated)

46028.9 Da

IEP (calculated)

8.118

GRAVY (calculated)

-0.155

Length

417 amino acids

Sequence
(BLAST)

001: MSSQVSTSHG LHPPGKLGTF ESPHAWPLSA PTAQPEAGRG DDQEVRLLSV AWNQDCGCFA AGTSNGFRIF NCDPFKETFR RDLKSGGFGI VEMLFRCNIL
101: ALVGGGSNVQ YPPNKVMIWD DHQSRCIGEF AFRSDVRAVK LAKDYIVIVL ERKIFVYNFT DLKLLYQIDT LSNPKGLCCL SHNSNTSVLA CPGVHQGHVR
201: VEHFGLKMAK TISAHDSHIS CMSLTMDGLL LATASTKGTL IRIFNTMDGT RLQEVRRGLD RAEIYSIAVS PNVQWLAVSS DKGTVHIFSL RVRVAGEDAS
301: NEQRTAESPR MDHQSSSSSI DPLIQANTGS NASSSLSFMR GILPKYFSSE WSFAQFHLPE VTRYIVAFGA QNTVMMVGLD GSFYRCSFDQ VNGGQMLQKE
401: YFRFLKSDSP PLRSAAI

Best Arabidopsis Sequence Match ( AT3G56440.1 )
(BLAST)

001: MDPRRNFQPG GYDSRNTFTS GSFGPPDFGE SDEAELVSVS WNQDYSCFAA GTSHGFRIYN CEPFKETFRR ELKDGGFKIV EMLFRSNILA LVGGGPNSQY
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R

Arabidopsis Description

ATG18DAutophagy-related protein 18d [Source:UniProtKB/Swiss-Prot;Acc:Q0WPK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.