CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64240	Soybean	cytosol, plastid	95.71	95.94
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	72.38	74.15
AT2G40810.1	Thale cress	cytosol	69.29	74.05
Solyc06g048510.2.1	Tomato	cytosol	73.33	74.04
CDY27213	Canola	cytosol	67.14	72.87
CDX72134	Canola	cytosol	66.9	72.61
CDX72135	Canola	cytosol	66.9	72.61
GSMUA_Achr10P...	Banana	cytosol, plastid	72.14	72.49
AT3G56440.1	Thale cress	cytosol	67.38	72.38
Bra016968.1-P	Field mustard	cytosol, plastid	70.0	72.06
CDY06959	Canola	cytosol, plastid	69.76	71.81
CDY14745	Canola	cytosol, plastid	69.29	71.32
HORVU3Hr1G017150.1	Barley	cytosol	70.48	70.98
TraesCS3D01G095500.1	Wheat	cytosol	70.24	70.74
TraesCS3B01G110900.1	Wheat	cytosol	70.24	70.74
TraesCS3A01G095300.1	Wheat	cytosol	70.24	70.74
OQU86240	Sorghum	cytosol	70.48	70.48
Os01t0168500-01	Rice	cytosol	69.76	70.26
Zm00001d039703_P001	Maize	cytosol	69.52	70.02
Zm00001d008691_P001	Maize	cytosol	68.57	66.21
KRG92887	Soybean	cytosol	55.71	62.07
KRH33898	Soybean	nucleus	54.52	60.9
HORVU3Hr1G017140.1	Barley	extracellular, plasma membrane	10.0	60.87
KRH50149	Soybean	cytosol, mitochondrion	9.76	60.29
GSMUA_AchrUn_...	Banana	cytosol, plastid	60.71	60.28
TraesCS1D01G114300.1	Wheat	cytosol	53.33	58.18
TraesCS1B01G132900.1	Wheat	cytosol	52.62	57.4
TraesCS1A01G112700.1	Wheat	cytosol	52.38	57.14
Os05t0169200-01	Rice	cytosol	50.0	54.97
KRH68154	Soybean	cytosol, plastid	53.81	53.43
KRG96415	Soybean	cytosol, plastid	53.57	53.19
KXG21420	Sorghum	peroxisome	42.38	44.61
KRH33489	Soybean	cytosol	10.24	29.45
KRH72365	Soybean	cytosol	22.62	25.82
KRH02984	Soybean	cytosol	22.62	25.75
KRH07770	Soybean	plastid	12.62	25.36

Protein Annotations

EntrezGene:100817377	MapMan:19.3.2.1.3	Gene3D:2.130.10.10	EMBL:ACUP02003480	EnsemblPlantsGene:GLYMA_06G140400	GO:GO:0000422
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006497	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0019538	GO:GO:0019898	GO:GO:0032266	GO:GO:0034045	GO:GO:0034497	GO:GO:0044804
GO:GO:0080025	InterPro:IPR001680	InterPro:IPR015943	UniProt:K7KUZ3	ProteinID:KRH53691.1	EnsemblPlants:KRH53692
ProteinID:KRH53692	ProteinID:KRH53692.1	PFAM:PF00400	PANTHER:PTHR11227	PANTHER:PTHR11227:SF45	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0002960AA9	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:11446116..11452361

Molecular Weight (calculated)

46677.5 Da

IEP (calculated)

7.556

GRAVY (calculated)

-0.144

Length

420 amino acids

Sequence
(BLAST)

001: MLAGSPSSHM SSSVLTSQGI FTTSRIGSSE SPNSGASSSF TQPMEDMNEN EETDLLSISW NQDYGCFAAG TSHGFRIYNC EPCKETFRRD LKSGGFKIVE
101: MLFRCNILAL VGAVANSHYP PNKVLIWDDH QSRCIGEFTF RSDVRGVKLR RDRIVVVLEH KIYVYNFTDL KLLHQIETLA NPRGLCCLSH YSNTFVLACP
201: GLHKGQVRVE HFGLNVTKLI NAHDSQIACF TLTLDGLLLA TASVKGTLIR IFNTMDGSRL QEVRRGVDRA EINSIALSPN VQWLAASSDK GTVHVFSLRV
301: RVFGEDSVTQ PNAVQGPALF HQNSSSSLDP LISPNTGANP NSSLSFMRGV LPKYFSSEWS FAQFHLPEYT PFIVAFGSQN SVIIVGMDGS FYKCSFDQVH
401: GGEMVQQEYV RFLKFENRPR

Best Arabidopsis Sequence Match ( AT2G40810.1 )
(BLAST)

001: MSSTVSNPQG ILQPGSFLLP ESESMKKEEA ELVSVCWNQD SSCFAAGTSH GFRIYNCEPF KETFRRELKD GGFKIVEMLF RSNILALVGG GPNSQYPSSK
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP

Arabidopsis Description

ATG18CAutophagy-related protein 18c [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.