CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06959	Canola	cytosol, plastid	97.79	97.79
Bra016968.1-P	Field mustard	cytosol, plastid	96.57	96.57
AT2G40810.1	Thale cress	cytosol	85.78	89.06
CDY27213	Canola	cytosol	77.94	82.17
CDX72134	Canola	cytosol	77.7	81.91
CDX72135	Canola	cytosol	77.7	81.91
KRH53692	Soybean	plastid	71.32	69.29
Solyc06g048510.2.1	Tomato	cytosol	70.34	68.99
KRH64240	Soybean	cytosol, plastid	70.59	68.74
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	68.38	68.05
GSMUA_Achr10P...	Banana	cytosol, plastid	67.89	66.27
OQU86240	Sorghum	cytosol	66.67	64.76
Zm00001d039703_P001	Maize	cytosol	66.18	64.75
TraesCS3D01G095500.1	Wheat	cytosol	65.44	64.03
TraesCS3B01G110900.1	Wheat	cytosol	65.44	64.03
TraesCS3A01G095300.1	Wheat	cytosol	65.2	63.79
HORVU3Hr1G017150.1	Barley	cytosol	65.2	63.79
Os01t0168500-01	Rice	cytosol	64.71	63.31
Zm00001d008691_P001	Maize	cytosol	65.69	61.61
TraesCS1D01G114300.1	Wheat	cytosol	55.39	58.7
TraesCS1B01G132900.1	Wheat	cytosol	55.15	58.44
TraesCS1A01G112700.1	Wheat	cytosol	54.9	58.18
GSMUA_AchrUn_...	Banana	cytosol, plastid	57.84	55.79
Os05t0169200-01	Rice	cytosol	51.96	55.5
CDX67903	Canola	nucleus	52.94	53.47
CDX89148	Canola	cytosol	53.43	52.53
CDY11447	Canola	nucleus	55.39	52.31
HORVU3Hr1G017140.1	Barley	extracellular, plasma membrane	8.82	52.17
CDX93962	Canola	cytosol	53.43	52.03
CDX76661	Canola	plastid	53.43	51.42
CDY25117	Canola	cytosol, plastid	53.43	50.82
CDY52140	Canola	cytosol	45.83	49.6
CDX80950	Canola	cytosol	45.1	48.81
KXG21420	Sorghum	peroxisome	44.61	45.61
CDX72248	Canola	plastid	23.53	26.16
CDY39210	Canola	cytosol, plastid	23.28	25.89

Protein Annotations

EnsemblPlants:CDY14745	EnsemblPlantsGene:GSBRNA2T00084593001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227
PANTHER:PTHR11227:SF45	ProteinID:CDY14745	ProteinID:CDY14745.1	SEG:seg	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0004EE3351	UniProt:A0A078FJZ6	MapMan:19.3.2.1.3	:	:	:

Description

BnaC04g47420DBnaC04g47420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJZ6]

Coordinates

chrLK032047:+:47406..49388

Molecular Weight (calculated)

45098.3 Da

IEP (calculated)

6.434

GRAVY (calculated)

-0.145

Length

408 amino acids

Sequence
(BLAST)

001: MSSTASSPQR VLQPGGYNGN DSRSSSTSSS FLRPELESSE TEEAELVSVS WNQDSSCFAA GTSHGFRIYN CEPFKETFRR DLKNGGFKIV EMLFRSNILA
101: LVGGGPNSQY PSTKVLIWDD HQSRCISEFS FRSEIRAVKL SRDWIVVVLE HKIYVYSFVD LRLLLQIETY ANPRGLCCLS HDSDTSVLAC PGLLRGEIRV
201: EHFGLNMVQT VNAHDAGIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVVGEDSDS
301: TESAALLTQQ TYSNSLQGLV SPATGTNPGS SLSFMRGVLP KYFSSEWSFA QFHVSEVTQF FAAFGSHNTV AITGMDGSFY RCSFDPVNAG EMVQLEHIHF
401: LKTDNRPR

Best Arabidopsis Sequence Match ( AT2G40810.1 )
(BLAST)

001: MSSTVSNPQG ILQPGSFLLP ESESMKKEEA ELVSVCWNQD SSCFAAGTSH GFRIYNCEPF KETFRRELKD GGFKIVEMLF RSNILALVGG GPNSQYPSSK
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP

Arabidopsis Description

ATG18CAutophagy-related protein 18c [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.