CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0169200-01	Rice	cytosol	49.12	51.31
TraesCS1D01G114300.1	Wheat	cytosol	48.62	50.39
TraesCS1B01G132900.1	Wheat	cytosol	48.62	50.39
TraesCS1A01G112700.1	Wheat	cytosol	48.37	50.13
CDY27213	Canola	cytosol	46.12	47.55
OQU86240	Sorghum	cytosol	49.87	47.38
CDX72134	Canola	cytosol	45.86	47.29
CDX72135	Canola	cytosol	45.86	47.29
AT3G56440.1	Thale cress	cytosol	46.12	47.06
AT2G40810.1	Thale cress	cytosol	45.61	46.31
Bra016968.1-P	Field mustard	cytosol, plastid	46.62	45.59
CDY06959	Canola	cytosol, plastid	45.86	44.85
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	45.86	44.63
CDY14745	Canola	cytosol, plastid	45.61	44.61
GSMUA_Achr10P...	Banana	cytosol, plastid	46.62	44.5
Solyc06g048510.2.1	Tomato	cytosol	45.86	43.99
KRH53692	Soybean	plastid	44.61	42.38
KRH64240	Soybean	cytosol, plastid	44.36	42.24
GSMUA_AchrUn_...	Banana	cytosol, plastid	39.35	37.12
EES04163	Sorghum	cytosol	40.1	35.09
OQU90455	Sorghum	cytosol, mitochondrion	29.32	28.96
KXG31257	Sorghum	cytosol	22.06	23.72

Protein Annotations

EnsemblPlants:KXG21420	EnsemblPlantsGene:SORBI_3009G060000	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227
PANTHER:PTHR11227:SF45	ProteinID:KXG21420	ProteinID:KXG21420.1	SEG:seg	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI00081AC785	UniProt:A0A1B6P6T1	MapMan:19.3.2.1.3	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:6267952..6270228

Molecular Weight (calculated)

43685.4 Da

IEP (calculated)

9.641

GRAVY (calculated)

-0.053

Length

399 amino acids

Sequence
(BLAST)

001: MGRAVAGGAA DATKADDGGG VRLVSVSWNQ DSTHFGVVTT ADFRVFDCSS PFHEKLRRVL PHGAGDGYAM VGVEMVFRSE IFVLVAATAA GEGCGRRSRV
101: VVWDDRENRR ISDVLEFQSD VVRAVRVSKD YLAVVLDRAV RVYPLLRASA RPIWRIATAL NRRGLCCLSC HAGVDVLACL GTTRGQVRVD RLGNKPEARF
201: IAAHSSHVAC MAMTVDGAVL ATASVKGTLV RVFSTMDGTC LQQVRRGLDP AEIHSIALSR DLQWLAVCSD KGTLHVFSLR ARVGAKDAAG HKQSADQAAR
301: SVVKTNTASA SNARSSLSFM KVILPDYFSS EWSFAQFRLP ETTTYVTAFG EQQNTVMIIG MDSSFYRCRF DPVNGKEMVR KEYFQFLKDK DSPPFRARV

Best Arabidopsis Sequence Match ( AT3G56440.1 )
(BLAST)

001: MDPRRNFQPG GYDSRNTFTS GSFGPPDFGE SDEAELVSVS WNQDYSCFAA GTSHGFRIYN CEPFKETFRR ELKDGGFKIV EMLFRSNILA LVGGGPNSQY
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R

Arabidopsis Description

ATG18DAutophagy-related protein 18d [Source:UniProtKB/Swiss-Prot;Acc:Q0WPK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.