Factsheet for Os05t0169200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G114300.1	Wheat	cytosol	63.61	63.12
TraesCS1A01G112700.1	Wheat	cytosol	63.61	63.12
TraesCS1B01G132900.1	Wheat	cytosol	63.35	62.86
Os01t0168500-01	Rice	cytosol	62.04	56.83
CDX72134	Canola	cytosol	55.76	55.04
CDX72135	Canola	cytosol	55.76	55.04
CDY27213	Canola	cytosol	55.76	55.04
AT3G56440.1	Thale cress	cytosol	56.28	54.99
AT2G40810.1	Thale cress	cytosol	54.97	53.44
GSMUA_Achr10P...	Banana	cytosol, plastid	57.85	52.87
Solyc06g048510.2.1	Tomato	cytosol	57.33	52.64
Bra016968.1-P	Field mustard	cytosol, plastid	56.02	52.45
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	56.02	52.2
CDY14745	Canola	cytosol, plastid	55.5	51.96
CDY06959	Canola	cytosol, plastid	55.5	51.96
KRH64240	Soybean	cytosol, plastid	54.97	50.12
KRH53692	Soybean	plastid	54.97	50.0
KXG21420	Sorghum	peroxisome	51.31	49.12
GSMUA_AchrUn_...	Banana	cytosol, plastid	49.48	44.68
Os01t0934000-01	Rice	plasma membrane	46.07	38.51
Os02t0791800-01	Rice	cytosol	26.7	27.27

Protein Annotations

MapMan:19.3.2.1.3	Gene3D:2.130.10.10	EntrezGene:4337929	ProteinID:BAF16674.1	ProteinID:BAS92465.1	ProteinID:EEE62477.1
GO:GO:0000422	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006497	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0019538	GO:GO:0019898	GO:GO:0032266	GO:GO:0034045	GO:GO:0034497
GO:GO:0044804	GO:GO:0080025	InterPro:IPR001680	InterPro:IPR015943	EnsemblPlantsGene:Os05g0169200	EnsemblPlants:Os05t0169200-01
PANTHER:PTHR11227	PANTHER:PTHR11227:SF45	UniProt:Q0DKE9	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00003584F9
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015639564.1	:	:

Description

AUTOPHAGY ASSOCIATED GENE 18DWD40 repeat-like domain containing protein. (Os05t0169200-01)

Coordinates

chr5:+:4144983..4148965

Molecular Weight (calculated)

42555.7 Da

IEP (calculated)

6.983

GRAVY (calculated)

-0.170

Length

382 amino acids

Sequence
(BLAST)

001: MGHVEEASGS DDDGVELLSV SWNQDNSCFI AATTNGFRVF SCKPFHETMR RMFGPNGGIG IAEMLFRTSI FGLAGAESNT EFPPTMLQLW DDYNERRIHK
101: YNFTSEIRAV RLSKDYFVVV LEKTINVYRF KDLRLFYQAR TVSNPNGLCC LSHHANASVF ACPGTSKGQV LIEHFGLKET RFIAAHDSPL SCMTMALDGT
201: LLATASVRGT LIRIFNTRDG TCVQEVRRGL DRAEIYSIAL SPNVQWLAVS SDKGTVHVFS LRVKDAEEDA KKGESATAGA QVNDNCNYGS TVPVTQTKIG
301: SNTSSSLSFM KGILPKYFSS EWSFAQFRLP EITRYIMAFG DQDTVMMIGL DGSFYRYSFD PVNGGEMMLK EYHLFLKASK SL

Best Arabidopsis Sequence Match ( AT3G56440.1 )
(BLAST)

001: MDPRRNFQPG GYDSRNTFTS GSFGPPDFGE SDEAELVSVS WNQDYSCFAA GTSHGFRIYN CEPFKETFRR ELKDGGFKIV EMLFRSNILA LVGGGPNSQY
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R

Arabidopsis Description

ATG18DAutophagy-related protein 18d [Source:UniProtKB/Swiss-Prot;Acc:Q0WPK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.