Factsheet for Bra016968.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06959	Canola	cytosol, plastid	98.28	98.28
CDY14745	Canola	cytosol, plastid	96.57	96.57
AT2G40810.1	Thale cress	cytosol	86.03	89.31
KRH53692	Soybean	plastid	72.06	70.0
Solyc06g048510.2.1	Tomato	cytosol	71.08	69.71
KRH64240	Soybean	cytosol, plastid	71.57	69.69
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	69.61	69.27
GSMUA_Achr10P...	Banana	cytosol, plastid	68.63	66.99
OQU86240	Sorghum	cytosol	67.65	65.71
Zm00001d039703_P001	Maize	cytosol	66.91	65.47
TraesCS3B01G110900.1	Wheat	cytosol	66.18	64.75
TraesCS3D01G095500.1	Wheat	cytosol	66.18	64.75
HORVU3Hr1G017150.1	Barley	cytosol	65.93	64.51
TraesCS3A01G095300.1	Wheat	cytosol	65.93	64.51
Os01t0168500-01	Rice	cytosol	65.2	63.79
Zm00001d008691_P001	Maize	cytosol	66.18	62.07
TraesCS1D01G114300.1	Wheat	cytosol	55.88	59.22
TraesCS1B01G132900.1	Wheat	cytosol	55.64	58.96
TraesCS1A01G112700.1	Wheat	cytosol	55.39	58.7
GSMUA_AchrUn_...	Banana	cytosol, plastid	58.58	56.5
Os05t0169200-01	Rice	cytosol	52.45	56.02
Bra014393.1-P	Field mustard	cytosol	53.43	53.3
HORVU3Hr1G017140.1	Barley	extracellular, plasma membrane	8.82	52.17
Bra003509.1-P	Field mustard	nucleus	53.19	52.16
Bra007700.1-P	Field mustard	nucleus, plastid	54.9	52.09
Bra005844.1-P	Field mustard	cytosol	45.34	49.07
KXG21420	Sorghum	peroxisome	45.59	46.62
Bra024070.1-P	Field mustard	plastid	23.53	26.23

Protein Annotations

EnsemblPlants:Bra016968.1	EnsemblPlants:Bra016968.1-P	EnsemblPlantsGene:Bra016968	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf
PANTHER:PTHR11227	PANTHER:PTHR11227:SF45	PFAM:PF00400	SEG:seg	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0002545123	UniProt:M4DKD9	MapMan:19.3.2.1.3	:	:	:

Description

AT2G40810 (E=2e-181) ATATG18C | AtATG18c

Coordinates

chrA04:+:17362183..17363974

Molecular Weight (calculated)

45041.2 Da

IEP (calculated)

6.578

GRAVY (calculated)

-0.146

Length

408 amino acids

Sequence
(BLAST)

001: MSSTASSPQR VLQPGGYNGN DSRSSSTSSS FLRPELESTE TEEAELVSVS WNQDSSCFAA GTSHGFRIYN CEPFKETFRR DLKNGGFKIV EMLFRSNILA
101: LVGGGPNSQY PSTKVLIWDD HQSRCISEFS FRSEIRAVKL SRDWIVVVLE HKIYVYSFVD LRLLLQIETH ANPRGLCCLS HHSDTSVLAC PGLLRGEIRV
201: EHFGLNMVQT INAHDASIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVVGEDSQS
301: SENAALLTQG TYSNSLQGLV SPATGTNPGS SLSFMRGVLP KYFSSEWSFA QFHVSEVTQF FAAFGSHNTV AITGMDGSFY RCSFDPVNGG EMVQQEYICF
401: LKTDNPPR

Best Arabidopsis Sequence Match ( AT2G40810.1 )
(BLAST)

001: MSSTVSNPQG ILQPGSFLLP ESESMKKEEA ELVSVCWNQD SSCFAAGTSH GFRIYNCEPF KETFRRELKD GGFKIVEMLF RSNILALVGG GPNSQYPSSK
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP

Arabidopsis Description

ATG18CAutophagy-related protein 18c [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.