Factsheet for Bra003509.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000064.1-P
Bra005104.1-P
Bra017117.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62770.1	Bra000064.1-P	AT2G38470.1	21395886
AT3G62770.1	Bra005104.1-P	AT2G38470.1	21395886
AT3G62770.1	Bra017117.1-P	AT2G38470.1	21395886

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67903	Canola	nucleus	96.39	99.26
Bra014393.1-P	Field mustard	cytosol	90.62	92.18
AT3G62770.1	Thale cress	nucleus, plastid	88.94	87.06
Bra007700.1-P	Field mustard	nucleus, plastid	88.22	85.35
VIT_07s0104g01790.t01	Wine grape	plastid	69.47	68.16
VIT_07s0104g01780.t01	Wine grape	plastid	71.15	67.43
KRH68154	Soybean	cytosol, plastid	65.38	64.3
KRG96415	Soybean	cytosol, plastid	64.18	63.12
Bra016968.1-P	Field mustard	cytosol, plastid	52.16	53.19
KRH50149	Soybean	cytosol, mitochondrion	8.41	51.47
Bra005844.1-P	Field mustard	cytosol	40.87	45.09
Bra024070.1-P	Field mustard	plastid	25.0	28.42

Protein Annotations

EnsemblPlants:Bra003509.1	EnsemblPlants:Bra003509.1-P	EnsemblPlantsGene:Bra003509	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf
PANTHER:PTHR11227	PANTHER:PTHR11227:SF33	SEG:seg	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000254194F
UniProt:M4CH26	MapMan:19.3.2.1.3	:	:	:	:

Description

AT3G62770 (E=5e-175) AtATG18a | AtATG18a

Coordinates

chrA07:-:13524796..13526696

Molecular Weight (calculated)

45656.2 Da

IEP (calculated)

7.776

GRAVY (calculated)

-0.233

Length

416 amino acids

Sequence
(BLAST)

001: MATVSSSPWP NPNTPPSDSD SHHRGDDAEP LDSFSSMTLT SSEDPNHNSD QIQTPSSPPA TPPPSLLHLS FNQDHACFAV GTSRGFRILN CDPFREIFRR
101: DFDRGGGVAV VEMLFRCNIL AIVGGGPDPQ YPPSKVMIWD DHQSRCIGEL SFRSDVRSVR LRRDRIVVVL EQKIFVYNFV DLKLMHQIET IANPKGLCAV
201: SQGAGGSMVL VCPGLQKGQV RIEHYASKRT KFVMAHDSRI ACFALTQDGG LLATASSKGT LVRVFNTVDG TLRQEVRRGA DRAEIYSLAF SSSAEWLAVS
301: SDKGTVHVFG LKVNSGSQVK DTPRIAAELT RSSSSPSSSL SLFKGVLPKY FSSEWSVAQF RLVEGTQYIV AFGHQKNTVV ILGMDGSFYR CQFDPVNGGE
401: MSQLEYHNCL KPPSVF

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.