Factsheet for VIT_07s0104g01780.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0058g00690.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62770.1	VIT_08s0058g00690.t01	AT2G38470.1	21395886

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0060g02380.t01	Wine grape	plastid	71.98	74.35
VIT_07s0104g01790.t01	Wine grape	plastid	71.3	73.82
Bra014393.1-P	Field mustard	cytosol	68.56	73.59
CDX89148	Canola	cytosol	68.79	72.77
CDX67903	Canola	nucleus	66.29	72.03
AT3G62770.1	Thale cress	nucleus, plastid	69.48	71.76
CDX93962	Canola	cytosol	68.34	71.6
Bra003509.1-P	Field mustard	nucleus	67.43	71.15
CDY25117	Canola	cytosol, plastid	68.11	69.7
CDX76661	Canola	plastid	67.2	69.58
KRH68154	Soybean	cytosol, plastid	66.97	69.5
CDY11447	Canola	nucleus	67.43	68.52
Bra007700.1-P	Field mustard	nucleus, plastid	66.97	68.37
KRG96415	Soybean	cytosol, plastid	65.6	68.09
KRH50149	Soybean	cytosol, mitochondrion	8.88	57.35
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	52.62	56.34
VIT_11s0037g00970.t01	Wine grape	cytosol	19.36	32.32
VIT_03s0091g00190.t01	Wine grape	plastid	6.15	28.72

Protein Annotations

EntrezGene:100259615	wikigene:100259615	MapMan:19.3.2.1.3	EMBL:AM436929	ProteinID:CAN67189	ProteinID:CAN67189.1
ProteinID:CCB56743	ProteinID:CCB56743.1	UniProt:F6HPY7	EMBL:FN596005	GO:GO:0000422	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006464	GO:GO:0006497	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0019538
GO:GO:0019898	GO:GO:0032266	GO:GO:0034045	GO:GO:0034497	GO:GO:0044804	GO:GO:0080025
InterPro:IPR001680	EntrezGene:LOC100259615	wikigene:LOC100259615	PFAM:PF00400	PANTHER:PTHR11227	PANTHER:PTHR11227:SF33
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00015CA9BA	ArrayExpress:VIT_07s0104g01780	EnsemblPlantsGene:VIT_07s0104g01780	EnsemblPlants:VIT_07s0104g01780.t01
unigene:Vvi.11384	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002263976	RefSeq:XP_002263976.1	SEG:seg

Description

No Description!

Coordinates

chr7:+:2779638..2782567

Molecular Weight (calculated)

48258.0 Da

IEP (calculated)

7.404

GRAVY (calculated)

-0.236

Length

439 amino acids

Sequence
(BLAST)

001: MATLTAVSSA SWPNPNPSPN STFLSQQSHP EQYPAVQDPT AMRQHQGTGL SGDGGEDESF SSSPNHHTVQ SPNSNLREVV SYSTSSIPSL LHISFNQDHG
101: CFAAGTDNGF RIYNCDPFRE IFRRDFDRGG GIGVVEMLFR CNILALVGGG PEPQYPLNKV MIWDDHQSRC IGELSFRSEV RAVKLRRDRI IVVLEQKIFL
201: YNFADLKLLH QIETIANPRG LCAVSQLTAS LVLVCPGLQK GQVRVEHYAS RRTKFFAAHD SRLACFALTT DGQLLATAST KGTLVRIFNT SDGTRLQEVR
301: RGADRAEVYS MAFSSTAQWL AVSSDKGTVH VFGLKVNSGS LGNDKSHGAS DANLAVASSG LSLSFIKGVL PKYFSSEWSV AQFRLHEGSQ YIVAFGHQKN
401: TVVILGMDGS FYRCQFDPVT GGEMTQLEYH NFLKPEEAF

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.