Factsheet for VIT_07s0104g01790.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0058g00690.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62770.1	VIT_08s0058g00690.t01	AT2G38470.1	21395886

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0104g01780.t01	Wine grape	plastid	73.82	71.3
Bra014393.1-P	Field mustard	cytosol	68.63	71.15
CDX89148	Canola	cytosol	68.63	70.12
VIT_14s0060g02380.t01	Wine grape	plastid	70.28	70.12
CDX67903	Canola	nucleus	66.75	70.05
Bra003509.1-P	Field mustard	nucleus	68.16	69.47
CDX93962	Canola	cytosol	68.63	69.45
CDX76661	Canola	plastid	68.63	68.63
CDY25117	Canola	cytosol, plastid	69.34	68.53
AT3G62770.1	Thale cress	nucleus, plastid	68.16	68.0
CDY11447	Canola	nucleus	67.69	66.44
KRH68154	Soybean	cytosol, plastid	66.27	66.43
Bra007700.1-P	Field mustard	nucleus, plastid	67.22	66.28
KRG96415	Soybean	cytosol, plastid	65.57	65.72
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	53.07	54.88
KRH50149	Soybean	cytosol, mitochondrion	8.49	52.94
VIT_11s0037g00970.t01	Wine grape	cytosol	20.52	33.08
VIT_03s0091g00190.t01	Wine grape	plastid	6.6	29.79

Protein Annotations

EntrezGene:100264797	wikigene:100264797	MapMan:19.3.2.1.3	Gene3D:2.130.10.10	ProteinID:CCB56742	ProteinID:CCB56742.1
UniProt:F6HPY6	EMBL:FN596005	GO:GO:0000422	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464
GO:GO:0006497	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0019538	GO:GO:0019898	GO:GO:0032266
GO:GO:0034045	GO:GO:0034497	GO:GO:0044804	GO:GO:0080025	InterPro:IPR001680	InterPro:IPR015943
EntrezGene:LOC100264797	wikigene:LOC100264797	PFAM:PF00400	PANTHER:PTHR11227	PANTHER:PTHR11227:SF33	SMART:SM00320
SUPFAM:SSF50978	TIGR:TC58140	TIGR:TC62854	UniParc:UPI00015CA9B8	ArrayExpress:VIT_07s0104g01790	EnsemblPlantsGene:VIT_07s0104g01790
EnsemblPlants:VIT_07s0104g01790.t01	unigene:Vvi.413	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002263669
RefSeq:XP_002263669.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:+:2800456..2804511

Molecular Weight (calculated)

46783.6 Da

IEP (calculated)

7.204

GRAVY (calculated)

-0.241

Length

424 amino acids

Sequence
(BLAST)

001: MATLSAFSTP SPPWPNPNPS SDPNPNAKSD LPDHEERSQR TELEDVDSPP NSRPTQNFNP NIQDGRLSPS SVPSLLHISF NQDYGCFATG TDRGFRVYTC
101: DPFREIFRRD LDRGGGIGVV EMRLVSNLMA LVGGGSDPQY PLNKVMIWDD YESRCIGELS FRSEVRAVRL QLDRIVVVLE QKIFVYNFAD LKLLHQMETI
201: ANPKGLCAVS QVAGSIVLVC PGLQKGQVRV EHYASKRTKF IAAHESRIAS FALSMDGQLL ATASSKGTLV RIYNTMDGVL LQELRRGADR AEIYSMAFSS
301: TAQWLVVSSD KGTVHVFSLK VNLASPGNDK SRGASNSNLA VASSTSSLSF IKGVLPKYFS SEWSVAQFRL PEGSQYIVAF GHQKNTVVIL GMDGSFYRCQ
401: FDAVSGGEMI QLEYHNFLKP ENTM

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.