CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX91470
CDY07729
CDY14459
CDY18383
CDY48650
CDY65564
CDY69941

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62770.1	CDX91470	AT2G38470.1	21395886
AT3G62770.1	CDY07729	AT2G38470.1	21395886
AT3G62770.1	CDY14459	AT2G38470.1	21395886
AT3G62770.1	CDY18383	AT2G38470.1	21395886
AT3G62770.1	CDY48650	AT2G38470.1	21395886
AT3G62770.1	CDY65564	AT2G38470.1	21395886
AT3G62770.1	CDY69941	AT2G38470.1	21395886

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014393.1-P	Field mustard	cytosol	97.59	99.02
CDX93962	Canola	cytosol	97.35	96.42
CDX67903	Canola	nucleus	89.4	91.83
CDY25117	Canola	cytosol, plastid	92.53	89.51
CDX76661	Canola	plastid	91.08	89.15
AT3G62770.1	Thale cress	nucleus, plastid	91.08	88.94
CDY11447	Canola	nucleus	89.64	86.11
VIT_07s0104g01780.t01	Wine grape	plastid	72.77	68.79
VIT_07s0104g01790.t01	Wine grape	plastid	70.12	68.63
KRH68154	Soybean	cytosol, plastid	66.99	65.72
KRG96415	Soybean	cytosol, plastid	65.78	64.54
CDY27213	Canola	cytosol	52.53	56.33
CDX72135	Canola	cytosol	52.29	56.07
CDX72134	Canola	cytosol	52.29	56.07
CDY06959	Canola	cytosol, plastid	52.53	53.43
CDY14745	Canola	cytosol, plastid	52.53	53.43
KRH50149	Soybean	cytosol, mitochondrion	8.67	52.94
CDY52140	Canola	cytosol	41.93	46.15
CDX80950	Canola	cytosol	41.69	45.89
CDX72248	Canola	plastid	25.06	28.34
CDY39210	Canola	cytosol, plastid	24.82	28.07

Protein Annotations

MapMan:19.3.2.1.3	Gene3D:2.130.10.10	EnsemblPlants:CDX89148	ProteinID:CDX89148	ProteinID:CDX89148.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00149297001	InterPro:IPR001680	InterPro:IPR015943	PFAM:PF00400
PANTHER:PTHR11227	PANTHER:PTHR11227:SF33	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE23C7	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaA04g00380D

Coordinates

chrLK031857:-:1410323..1412126

Molecular Weight (calculated)

45532.9 Da

IEP (calculated)

7.787

GRAVY (calculated)

-0.223

Length

415 amino acids

Sequence
(BLAST)

001: MATVSSASPW PIDSTSASDS SSTAPSHHRD PGADTESLDS FSSMSLNSEE ATHNSDQTPA PPPPSLLHLS FNQDHACFAV GTDRGFRILN CDPFREIFRR
101: DFDRGGGVAV VEMLFRCNIL ALVGGGPDPQ YPPNKVMIWD DHQSRCIGEL SFRSDVRSVR LRRDRIIVVL EQKIFVYNFA DLKLMHQIET IANPKGLCAV
201: SQGAGSMVLV CPGLQKGQVR IEHYASKRTK FVMAHDSRIA CFALTQDGHL LATASSKGTL VRIFNTVDGT LRQEVRRGAD RAEIYSLAFS SNAQWLAVSS
301: DKGTVHVFGL KGNSGAQVKD TPRIASDLTR TSSSPSSSLS LFKGVLPKYF SSEWSVAQFR LVEGTQYIVA FGHQKNTVVI LGMDGSFYRC QFDPVNGGEM
401: SQLEYHNCLK PPSVF

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.