CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005844.1-P	Field mustard	cytosol	96.82	96.82
CDX80950	Canola	cytosol	96.02	96.02
AT5G05150.1	Thale cress	cytosol	72.41	72.99
CDY27213	Canola	cytosol	49.34	48.06
CDX72134	Canola	cytosol	49.34	48.06
CDX72135	Canola	cytosol	49.34	48.06
CDY06959	Canola	cytosol, plastid	50.13	46.32
CDY14745	Canola	cytosol, plastid	49.6	45.83
CDX67903	Canola	nucleus	45.36	42.33
CDX76661	Canola	plastid	47.21	41.98
CDX89148	Canola	cytosol	46.15	41.93
CDX93962	Canola	cytosol	45.89	41.29
CDY11447	Canola	nucleus	46.68	40.74
CDY25117	Canola	cytosol, plastid	45.89	40.33
TraesCS2B01G134400.1	Wheat	cytosol	25.99	30.62
TraesCS2D01G119500.1	Wheat	plastid	30.77	30.37
TraesCS2D01G116100.1	Wheat	cytosol	31.57	30.13
TraesCS2B01G134500.1	Wheat	cytosol	31.3	29.72
TraesCS2A01G115200.1	Wheat	cytosol	31.57	29.46
TraesCS2B01G134900.1	Wheat	cytosol	32.1	28.88
OQU90455	Sorghum	cytosol, mitochondrion	29.18	27.23
TraesCS4B01G179000.2	Wheat	plastid	31.57	25.81
CDX72248	Canola	plastid	24.14	24.8
CDY39210	Canola	cytosol, plastid	24.14	24.8

Protein Annotations

EnsemblPlants:CDY52140	EnsemblPlantsGene:GSBRNA2T00004965001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227
PANTHER:PTHR11227:SF45	ProteinID:CDY52140	ProteinID:CDY52140.1	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EEC548
UniProt:A0A078IM36	MapMan:19.3.2.1.3	:	:	:	:

Description

BnaA03g55190DBnaA03g55190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IM36]

Coordinates

chrLK033059:-:51643..53188

Molecular Weight (calculated)

41898.5 Da

IEP (calculated)

8.553

GRAVY (calculated)

-0.025

Length

377 amino acids

Sequence
(BLAST)

001: MSSMIFSTVR GIGSFLKSKT YDQPIDVAAK GDTKVLSVSW NQDWSGFSVG TERGFNVYSC NPIKESISRE THKSGFKIVE MLFLSNLFAL VGNGYSNSEY
101: PPNKVFIWND HTNSCFCELG FKSQVVAVKL RRKHIVVVLE RSVYVYNFTN LKVQSIIETV ENPRGLCCVS QAEAKAVMAC PGLHPGQVQV RDLKRNIVKV
201: IKAHDSDIAC MSLTLDGSLL ATASTKGTLI RIFNSLDGTL LQEFRRGMER AEIYSVAISS NMKWVAASSE KGTLHVFHLR PDILSSPKDI DHASSLSLIR
301: GILPMYSYGN ERSFAQFSLP VSTKFIVGFG PENTVLLVGM DGSFRRCRFD GEGGQMVEME HKHFFSLTQT EEAVVVI

Best Arabidopsis Sequence Match ( AT5G05150.1 )
(BLAST)

001: MNSIVSTVRG ILTLSRSETF DSPRDEAKSD LKVLSVAWNQ VCSGFIVGTN HGFNVYSCKP MIKKSISRAP HESGFKVAEM LFLSNLFAFV GNGYNNSEYP
101: PNKVFVWDDY RNCCLSELTF KSEVIAVKLA REHVVVVLKQ NIYVYTFNNL KVDRVIETLM NPKGLCCVTH VESKAVLACP GFHPGQVQVH DLRWNVIKFI
201: KAHDSAIACM TLTLDGSLLA TASTKGTLIR IFNAVDGTLL QEFRRGVERA EIYNVAISSN LKWVAASSEK GTLHVFRLRP DILSFDPASS SSFIRVILPK
301: YLYENERSFA QFSLPASTKF IVGFGSENTV LLVGIDGSFR RCKFDHADGG QMVELEHKYF FSLQETGNTM VGGV

Arabidopsis Description

ATG18EAutophagy-related protein 18e [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.