CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52140	Canola	cytosol	96.02	96.02
AT5G05150.1	Thale cress	cytosol	72.68	73.26
CDX72134	Canola	cytosol	48.54	47.29
CDX72135	Canola	cytosol	48.54	47.29
CDY27213	Canola	cytosol	48.54	47.29
CDY06959	Canola	cytosol, plastid	49.34	45.59
CDY14745	Canola	cytosol, plastid	48.81	45.1
CDX67903	Canola	nucleus	44.83	41.83
CDX89148	Canola	cytosol	45.89	41.69
CDX76661	Canola	plastid	46.68	41.51
CDX93962	Canola	cytosol	45.62	41.05
CDY11447	Canola	nucleus	46.15	40.28
CDY25117	Canola	cytosol, plastid	45.36	39.86
TraesCS2B01G134400.1	Wheat	cytosol	25.99	30.62
TraesCS2D01G119500.1	Wheat	plastid	30.5	30.1
TraesCS2D01G116100.1	Wheat	cytosol	31.3	29.87
TraesCS2B01G134500.1	Wheat	cytosol	31.03	29.47
TraesCS2A01G115200.1	Wheat	cytosol	31.3	29.21
TraesCS2B01G134900.1	Wheat	cytosol	31.83	28.64
OQU90455	Sorghum	cytosol, mitochondrion	28.91	26.98
TraesCS4B01G179000.2	Wheat	plastid	31.3	25.6
CDX72248	Canola	plastid	24.4	25.07
CDY39210	Canola	cytosol, plastid	23.87	24.52

Protein Annotations

EnsemblPlants:CDX80950	EnsemblPlantsGene:GSBRNA2T00134365001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227
PANTHER:PTHR11227:SF45	ProteinID:CDX80950	ProteinID:CDX80950.1	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EDD030
MapMan:19.3.2.1.3	:	:	:	:	:

Description

BnaC03g02040D

Coordinates

chrLK031823:-:959375..960943

Molecular Weight (calculated)

41806.5 Da

IEP (calculated)

8.626

GRAVY (calculated)

-0.004

Length

377 amino acids

Sequence
(BLAST)

001: MSSMIFSTVR GIGSFLKSKT CNTPIDEAAK GDTKVLSVSW NQDWSGFIVG TERGFNVYSC NPIKESISRE THKSGFKIVE MLFLSNLFAL VGNGYSNSEY
101: PPNKVFIWND HTNSCFCELG FKSQVVAVKL RRKHIMVVLE RSVYVYNFTN LKVQSIIETA VNPRGLCCVS QAEAKAVLAC PGLHPGQVQV RDLKRNIVKV
201: IKAHDSDVAC MSLTLDGSLL ATASTKGTLI RIFNSLDGTL LQEFRRGMER TEIYSVAISS NMKWVAASSE KGTLHVFHLR PDILSSPKDI DHASSLSLIR
301: GILPMYSYGN ERSFAQFSLP VSTKFIVGFG PENTVLLVGI DGSFRRCRFD GEGGQMVELE HKHFFSLTQT EDAVVVM

Best Arabidopsis Sequence Match ( AT5G05150.1 )
(BLAST)

001: MNSIVSTVRG ILTLSRSETF DSPRDEAKSD LKVLSVAWNQ VCSGFIVGTN HGFNVYSCKP MIKKSISRAP HESGFKVAEM LFLSNLFAFV GNGYNNSEYP
101: PNKVFVWDDY RNCCLSELTF KSEVIAVKLA REHVVVVLKQ NIYVYTFNNL KVDRVIETLM NPKGLCCVTH VESKAVLACP GFHPGQVQVH DLRWNVIKFI
201: KAHDSAIACM TLTLDGSLLA TASTKGTLIR IFNAVDGTLL QEFRRGVERA EIYNVAISSN LKWVAASSEK GTLHVFRLRP DILSFDPASS SSFIRVILPK
301: YLYENERSFA QFSLPASTKF IVGFGSENTV LLVGIDGSFR RCKFDHADGG QMVELEHKYF FSLQETGNTM VGGV

Arabidopsis Description

ATG18EAutophagy-related protein 18e [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.