Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72134 | Canola | cytosol | 100.0 | 100.0 |
| CDY27213 | Canola | cytosol | 99.22 | 99.22 |
| AT3G56440.1 | Thale cress | cytosol | 87.08 | 86.19 |
| CDY06959 | Canola | cytosol, plastid | 81.91 | 77.7 |
| CDY14745 | Canola | cytosol, plastid | 81.91 | 77.7 |
| Solyc06g048510.2.1 | Tomato | cytosol | 73.64 | 68.51 |
| VIT_13s0067g00170.t01 | Wine grape | cytosol, plastid | 71.58 | 67.56 |
| KRH64240 | Soybean | cytosol, plastid | 73.13 | 67.54 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 72.35 | 66.99 |
| KRH53692 | Soybean | plastid | 72.61 | 66.9 |
| OQU86240 | Sorghum | cytosol | 70.28 | 64.76 |
| Zm00001d039703_P001 | Maize | cytosol | 69.77 | 64.75 |
| TraesCS3B01G110900.1 | Wheat | cytosol | 68.99 | 64.03 |
| TraesCS3D01G095500.1 | Wheat | cytosol | 68.99 | 64.03 |
| TraesCS3A01G095300.1 | Wheat | cytosol | 68.73 | 63.79 |
| HORVU3Hr1G017150.1 | Barley | cytosol | 68.73 | 63.79 |
| Os01t0168500-01 | Rice | cytosol | 68.73 | 63.79 |
| Zm00001d008691_P001 | Maize | cytosol | 68.22 | 60.69 |
| TraesCS1D01G114300.1 | Wheat | cytosol | 58.4 | 58.7 |
| TraesCS1B01G132900.1 | Wheat | cytosol | 58.14 | 58.44 |
| TraesCS1A01G112700.1 | Wheat | cytosol | 57.88 | 58.18 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 61.5 | 56.26 |
| Os05t0169200-01 | Rice | cytosol | 55.04 | 55.76 |
| HORVU3Hr1G017140.1 | Barley | extracellular, plasma membrane | 9.56 | 53.62 |
| CDX67903 | Canola | nucleus | 55.81 | 53.47 |
| CDX89148 | Canola | cytosol | 56.07 | 52.29 |
| CDX93962 | Canola | cytosol | 56.07 | 51.79 |
| CDY25117 | Canola | cytosol, plastid | 56.59 | 51.05 |
| CDX76661 | Canola | plastid | 55.56 | 50.71 |
| CDY11447 | Canola | nucleus | 56.33 | 50.46 |
| CDY52140 | Canola | cytosol | 48.06 | 49.34 |
| CDX80950 | Canola | cytosol | 47.29 | 48.54 |
| KXG21420 | Sorghum | peroxisome | 47.29 | 45.86 |
| CDX72248 | Canola | plastid | 24.81 | 26.16 |
| CDY39210 | Canola | cytosol, plastid | 24.55 | 25.89 |
Protein Annotations
| EnsemblPlants:CDX72135 | EnsemblPlantsGene:GSBRNA2T00155954001 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom_sf | PANTHER:PTHR11227 |
| PANTHER:PTHR11227:SF45 | ProteinID:CDX72135 | ProteinID:CDX72135.1 | SEG:seg | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI0004EF0A06 | MapMan:19.3.2.1.3 | : | : | : | : |
Description
BnaC08g27390D
Coordinates
chrLK031795:-:2608762..2611566
Molecular Weight (calculated)
43242.6 Da
IEP (calculated)
7.823
GRAVY (calculated)
-0.156
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSTLYNSQG ILHPRGFRSP EPGFGDSDGA ELVSVSWNQD YSCFSSGTSH GFRIYNCEPF KETFRRELKD GGFKIVEMLF RSNILALVGG GPNSQYPSNK
101: VLIWDDHQSR CISEFSFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIENLANPR GLCCLSHHMN TSVLACPGVR RGEVRVEHFG LNMVQIINAH
201: DANIACMTMT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGTDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVS GEDSHSTEHE TSSNSLQALV
301: TPASGVNPGS SLSFLRGVLP RYFSSEWSFA QFHVPEVTQF FAAFGAQNTI AIIGMDGSFY RCSFDPVNGG EMTQLEYVRF LKPGTLK
101: VLIWDDHQSR CISEFSFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIENLANPR GLCCLSHHMN TSVLACPGVR RGEVRVEHFG LNMVQIINAH
201: DANIACMTMT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGTDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVS GEDSHSTEHE TSSNSLQALV
301: TPASGVNPGS SLSFLRGVLP RYFSSEWSFA QFHVPEVTQF FAAFGAQNTI AIIGMDGSFY RCSFDPVNGG EMTQLEYVRF LKPGTLK
001: MDPRRNFQPG GYDSRNTFTS GSFGPPDFGE SDEAELVSVS WNQDYSCFAA GTSHGFRIYN CEPFKETFRR ELKDGGFKIV EMLFRSNILA LVGGGPNSQY
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R
Arabidopsis Description
ATG18DAutophagy-related protein 18d [Source:UniProtKB/Swiss-Prot;Acc:Q0WPK3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.