Factsheet for GSMUA_Achr10P01710_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G095500.1	Wheat	cytosol	73.92	74.1
TraesCS3B01G110900.1	Wheat	cytosol	73.92	74.1
TraesCS3A01G095300.1	Wheat	cytosol	73.92	74.1
Zm00001d039703_P001	Maize	cytosol	73.68	73.86
HORVU3Hr1G017150.1	Barley	cytosol	73.44	73.62
Os01t0168500-01	Rice	cytosol	72.73	72.9
OQU86240	Sorghum	cytosol	73.21	72.86
KRH64240	Soybean	cytosol, plastid	72.73	72.55
CDX72134	Canola	cytosol	66.99	72.35
CDX72135	Canola	cytosol	66.99	72.35
CDY27213	Canola	cytosol	66.99	72.35
KRH53692	Soybean	plastid	72.49	72.14
Solyc06g048510.2.1	Tomato	cytosol	71.05	71.39
AT2G40810.1	Thale cress	cytosol	66.51	70.74
AT3G56440.1	Thale cress	cytosol	66.03	70.59
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	67.46	68.78
Bra016968.1-P	Field mustard	cytosol, plastid	66.99	68.63
CDY06959	Canola	cytosol, plastid	66.51	68.14
CDY14745	Canola	cytosol, plastid	66.27	67.89
Zm00001d008691_P001	Maize	cytosol	70.33	67.59
HORVU3Hr1G017140.1	Barley	extracellular, plasma membrane	10.53	63.77
GSMUA_AchrUn_...	Banana	cytosol, plastid	64.35	63.59
GSMUA_Achr11P...	Banana	cytosol	44.98	62.67
TraesCS1B01G132900.1	Wheat	cytosol	55.98	60.78
TraesCS1D01G114300.1	Wheat	cytosol	55.98	60.78
TraesCS1A01G112700.1	Wheat	cytosol	55.5	60.26
Os05t0169200-01	Rice	cytosol	52.87	57.85
KXG21420	Sorghum	peroxisome	44.5	46.62
GSMUA_Achr8P10070_001	Banana	cytosol	47.13	32.67
GSMUA_Achr9P13430_001	Banana	plastid	23.68	26.9

Protein Annotations

EnsemblPlants:GSMUA_Achr10P01710_001	EnsemblPlants:GSMUA_Achr10T01710_001	EnsemblPlantsGene:GSMUA_Achr10G01710_001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227	PANTHER:PTHR11227:SF45	SEG:seg
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000295BB24	UniProt:M0REJ8	MapMan:19.3.2.1.3	:

Description

Putative WD repeat domain phosphoinositide-interacting protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr10G01710_001]

Coordinates

chr10:-:3966004..3975461

Molecular Weight (calculated)

46580.4 Da

IEP (calculated)

7.540

GRAVY (calculated)

-0.238

Length

418 amino acids

Sequence
(BLAST)

001: MSSRISTSSS IHPPMGIASL ESQQSWPSST PFSQPEPGDY DDDNGTELLS VSWNQDYGCF AVGTSNGFRI YNCDPFKETF RRDLKSGGFG IVEMLFRSNI
101: LALVGGGANM QYPPNKVMIW DDHQSRCVGE YAYRSNVRGV KLRRDRIVIV LEHKIYVYDF TDLKLLHQIE TQSNPKGLCC LSHHSSTSVL ACPGLRRGEV
201: RVEHFGLKMT KVISAHDSQI SCMTMTLDGL LLATASTKGT LIRIFNTMDG TQLQEVRRGL DRAEIYSIAL STNVQWLVVS SDKGTVHVFR LRVRVGGEDA
301: SFQLPAVQAP EMVHQNSSTP VDALISPNTG ANNNSSLYFM RGVLPKYFSS EWSFAQFHLP EVTRYIAAFG SQNTVMIVGM DGSFCRCTFD PVNGGQMFQT
401: EYVRFLKADR HQPQSVTS

Best Arabidopsis Sequence Match ( AT3G56440.1 )
(BLAST)

001: MDPRRNFQPG GYDSRNTFTS GSFGPPDFGE SDEAELVSVS WNQDYSCFAA GTSHGFRIYN CEPFKETFRR ELKDGGFKIV EMLFRSNILA LVGGGPNSQY
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R

Arabidopsis Description

ATG18DAutophagy-related protein 18d [Source:UniProtKB/Swiss-Prot;Acc:Q0WPK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.