Factsheet for Zm00001d008691_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU86240	Sorghum	cytosol	89.66	92.86
Zm00001d039703_P001	Maize	cytosol	87.13	90.89
Os01t0168500-01	Rice	cytosol	81.61	85.13
TraesCS3D01G095500.1	Wheat	cytosol	80.46	83.93
TraesCS3B01G110900.1	Wheat	cytosol	80.46	83.93
HORVU3Hr1G017150.1	Barley	cytosol	80.46	83.93
TraesCS3A01G095300.1	Wheat	cytosol	80.23	83.69
HORVU3Hr1G017140.1	Barley	extracellular, plasma membrane	11.26	71.01
GSMUA_Achr10P...	Banana	cytosol, plastid	67.59	70.33
KRH64240	Soybean	cytosol, plastid	67.13	69.69
AT3G56440.1	Thale cress	cytosol	61.84	68.8
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	64.83	68.78
KRH53692	Soybean	plastid	66.21	68.57
CDY27213	Canola	cytosol	60.92	68.48
AT2G40810.1	Thale cress	cytosol	61.84	68.45
CDX72135	Canola	cytosol	60.69	68.22
CDX72134	Canola	cytosol	60.69	68.22
Bra016968.1-P	Field mustard	cytosol, plastid	62.07	66.18
Solyc06g048510.2.1	Tomato	cytosol	63.22	66.11
CDY06959	Canola	cytosol, plastid	61.84	65.93
CDY14745	Canola	cytosol, plastid	61.61	65.69
GSMUA_AchrUn_...	Banana	cytosol, plastid	57.01	58.63
Zm00001d042215_P002	Maize	cytosol, extracellular	48.74	47.22
Zm00001d011920_P003	Maize	cytosol	49.2	44.31
Zm00001d010645_P001	Maize	cytosol	27.36	39.14
Zm00001d015812_P001	Maize	cytosol	11.95	30.41
Zm00001d018355_P005	Maize	cytosol, plastid	22.99	26.95

Protein Annotations

EnsemblPlants:Zm00001d008691_P001	EnsemblPlants:Zm00001d008691_T001	EnsemblPlantsGene:Zm00001d008691	EntrezGene:100501577	Gene3D:2.130.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227	PANTHER:PTHR11227:SF45	PFAM:PF00400	ProteinID:AQK90442.1	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000843BE98	UniProt:A0A1D6FER6	MapMan:19.3.2.1.3	:	:

Description

autophagy18dAutophagy-related protein 18c

Coordinates

chr8:+:17288750..17293014

Molecular Weight (calculated)

48196.8 Da

IEP (calculated)

7.751

GRAVY (calculated)

-0.067

Length

435 amino acids

Sequence
(BLAST)

001: MSSHVSTSRG LHPPGKLGTL DSPGAWQPPA PMAQPEAGRG DDQEVRLLSV AWNQDCGCFA AGTSNGFRIF NCEPFKETFR RDLKSGGFAI VEMLFRCNVL
101: ALVGGGSNVL YPPNKVIIWD DLLSRCIGEF AFRSDVRAVK LAKDYIVIVL ERKIFVYNFT DLKLLYQIDT LSNPNGLCCL SHHSNTSVLA CPGLHQGHVR
201: VEHFGLQMVK TIPAHDSHIS CMSLTMDGLL LATASTKGTL IRIFNTMDGT RLQEVRRGLD KAEIYSIALS PNVQWLAVSS DKGTVHIFSL RVRVAGVDSS
301: NEQRALEGPR MDHQNSSSSI DPLIQANTGS NASSSLSFMR DDAYIIAIPV ELSIWILPKY FSSEWSFAQF HLPEVTRYIV AFGAQNTVMM VGLDGRYLPY
401: FYRCSFDQAN GGQMLQREHF RFLKSDSPPF RTAAA

Best Arabidopsis Sequence Match ( AT3G56440.1 )
(BLAST)

001: MDPRRNFQPG GYDSRNTFTS GSFGPPDFGE SDEAELVSVS WNQDYSCFAA GTSHGFRIYN CEPFKETFRR ELKDGGFKIV EMLFRSNILA LVGGGPNSQY
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R

Arabidopsis Description

ATG18DAutophagy-related protein 18d [Source:UniProtKB/Swiss-Prot;Acc:Q0WPK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.