Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27213 | Canola | cytosol | 68.75 | 73.9 |
| CDX72134 | Canola | cytosol | 68.51 | 73.64 |
| CDX72135 | Canola | cytosol | 68.51 | 73.64 |
| KRH53692 | Soybean | plastid | 74.04 | 73.33 |
| KRH64240 | Soybean | cytosol, plastid | 73.56 | 73.03 |
| AT2G40810.1 | Thale cress | cytosol | 68.99 | 73.03 |
| AT3G56440.1 | Thale cress | cytosol | 68.27 | 72.63 |
| VIT_13s0067g00170.t01 | Wine grape | cytosol, plastid | 70.67 | 71.71 |
| Bra016968.1-P | Field mustard | cytosol, plastid | 69.71 | 71.08 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 71.39 | 71.05 |
| CDY06959 | Canola | cytosol, plastid | 69.47 | 70.83 |
| CDY14745 | Canola | cytosol, plastid | 68.99 | 70.34 |
| HORVU3Hr1G017150.1 | Barley | cytosol | 68.75 | 68.59 |
| Os01t0168500-01 | Rice | cytosol | 68.51 | 68.35 |
| TraesCS3D01G095500.1 | Wheat | cytosol | 68.51 | 68.35 |
| TraesCS3B01G110900.1 | Wheat | cytosol | 68.51 | 68.35 |
| Zm00001d039703_P001 | Maize | cytosol | 68.27 | 68.11 |
| TraesCS3A01G095300.1 | Wheat | cytosol | 68.03 | 67.87 |
| OQU86240 | Sorghum | cytosol | 68.03 | 67.38 |
| Zm00001d008691_P001 | Maize | cytosol | 66.11 | 63.22 |
| TraesCS1D01G114300.1 | Wheat | cytosol | 55.77 | 60.26 |
| TraesCS1B01G132900.1 | Wheat | cytosol | 55.53 | 60.0 |
| TraesCS1A01G112700.1 | Wheat | cytosol | 55.29 | 59.74 |
| HORVU3Hr1G017140.1 | Barley | extracellular, plasma membrane | 9.86 | 59.42 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 59.86 | 58.87 |
| Os05t0169200-01 | Rice | cytosol | 52.64 | 57.33 |
| Solyc08g074340.1.1 | Tomato | cytosol, extracellular | 25.72 | 53.23 |
| Solyc08g006010.2.1 | Tomato | cytosol | 49.76 | 49.4 |
| KXG21420 | Sorghum | peroxisome | 43.99 | 45.86 |
| Solyc01g099400.2.1 | Tomato | mitochondrion | 32.45 | 42.59 |
| Solyc04g076720.1.1 | Tomato | plastid | 23.8 | 40.24 |
| Solyc07g006120.2.1 | Tomato | cytosol | 24.28 | 27.67 |
Protein Annotations
| MapMan:19.3.2.1.3 | GO:GO:0000422 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0006497 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0019898 | GO:GO:0032266 | GO:GO:0034045 |
| GO:GO:0034497 | GO:GO:0044804 | GO:GO:0080025 | InterPro:IPR001680 | UniProt:K4C598 | PANTHER:PTHR11227 |
| PANTHER:PTHR11227:SF45 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc06g048510.2 | EnsemblPlants:Solyc06g048510.2.1 | UniParc:UPI000276654D |
| InterPro:WD40_repeat | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6:+:31171655..31176148
Molecular Weight (calculated)
45755.5 Da
IEP (calculated)
7.442
GRAVY (calculated)
-0.105
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTLSSLNSS TVSPSGGTIS PAAFGTYESP MPGDSHSGHS EPAITDNDET ELHFVSWNQD YSCFAAGTSR GFRVYNCDPF KETFRRDLKS GGFGIVEMLF
101: RCNILALVGA KANTQYPPNK VIIWDDHQSR CIGEFSFRSE VRAVKLRRDC IVVVLEHKIY VYNFMDLKLL HQIETVANPR GLCCLSHQLS TSVLACPGLR
201: RGQVRVEHFG LNMTKLIKAH DSQIACLTLT IDGLLLATAS TRGTLIRLFN TIDGTQLQEV RRGVDRADIC SIALSPNVQW LVVSSDKGTI HVYSLRVRVV
301: GEDASADAAV RTPTLLCQNS SSSLDALISP STGANPGSSL SFMKGVLPKY FSSEWSFAQF HLPECTQYIA AFGSQNTIIT AGTDGSFYRC SFDPVNGGEM
401: VQQEYVRFLK TESRPR
101: RCNILALVGA KANTQYPPNK VIIWDDHQSR CIGEFSFRSE VRAVKLRRDC IVVVLEHKIY VYNFMDLKLL HQIETVANPR GLCCLSHQLS TSVLACPGLR
201: RGQVRVEHFG LNMTKLIKAH DSQIACLTLT IDGLLLATAS TRGTLIRLFN TIDGTQLQEV RRGVDRADIC SIALSPNVQW LVVSSDKGTI HVYSLRVRVV
301: GEDASADAAV RTPTLLCQNS SSSLDALISP STGANPGSSL SFMKGVLPKY FSSEWSFAQF HLPECTQYIA AFGSQNTIIT AGTDGSFYRC SFDPVNGGEM
401: VQQEYVRFLK TESRPR
001: MDPRRNFQPG GYDSRNTFTS GSFGPPDFGE SDEAELVSVS WNQDYSCFAA GTSHGFRIYN CEPFKETFRR ELKDGGFKIV EMLFRSNILA LVGGGPNSQY
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R
Arabidopsis Description
ATG18DAutophagy-related protein 18d [Source:UniProtKB/Swiss-Prot;Acc:Q0WPK3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.