Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
- cytosol 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH64240 | Soybean | cytosol, plastid | 74.88 | 73.27 |
KRH53692 | Soybean | plastid | 74.15 | 72.38 |
AT2G40810.1 | Thale cress | cytosol | 69.02 | 72.01 |
CDY27213 | Canola | cytosol | 67.8 | 71.83 |
CDX72134 | Canola | cytosol | 67.56 | 71.58 |
CDX72135 | Canola | cytosol | 67.56 | 71.58 |
Solyc06g048510.2.1 | Tomato | cytosol | 71.71 | 70.67 |
AT3G56440.1 | Thale cress | cytosol | 67.07 | 70.33 |
Bra016968.1-P | Field mustard | cytosol, plastid | 69.27 | 69.61 |
CDY06959 | Canola | cytosol, plastid | 68.54 | 68.87 |
TraesCS3D01G095500.1 | Wheat | cytosol | 69.76 | 68.59 |
TraesCS3B01G110900.1 | Wheat | cytosol | 69.76 | 68.59 |
TraesCS3A01G095300.1 | Wheat | cytosol | 69.76 | 68.59 |
HORVU3Hr1G017150.1 | Barley | cytosol | 69.76 | 68.59 |
CDY14745 | Canola | cytosol, plastid | 68.05 | 68.38 |
Os01t0168500-01 | Rice | cytosol | 69.51 | 68.35 |
Zm00001d039703_P001 | Maize | cytosol | 69.02 | 67.87 |
OQU86240 | Sorghum | cytosol | 69.51 | 67.86 |
GSMUA_Achr10P... | Banana | cytosol, plastid | 68.78 | 67.46 |
Zm00001d008691_P001 | Maize | cytosol | 68.78 | 64.83 |
TraesCS1D01G114300.1 | Wheat | cytosol | 54.88 | 58.44 |
TraesCS1B01G132900.1 | Wheat | cytosol | 54.39 | 57.92 |
TraesCS1A01G112700.1 | Wheat | cytosol | 54.15 | 57.66 |
GSMUA_AchrUn_... | Banana | cytosol, plastid | 59.02 | 57.21 |
HORVU3Hr1G017140.1 | Barley | extracellular, plasma membrane | 9.51 | 56.52 |
Os05t0169200-01 | Rice | cytosol | 52.2 | 56.02 |
VIT_14s0060g02380.t01 | Wine grape | plastid | 55.12 | 53.18 |
VIT_07s0104g01790.t01 | Wine grape | plastid | 54.88 | 53.07 |
VIT_07s0104g01780.t01 | Wine grape | plastid | 56.34 | 52.62 |
KXG21420 | Sorghum | peroxisome | 44.63 | 45.86 |
VIT_11s0037g00970.t01 | Wine grape | cytosol | 20.98 | 32.7 |
VIT_03s0091g00190.t01 | Wine grape | plastid | 7.32 | 31.91 |
Protein Annotations
EntrezGene:100248334 | wikigene:100248334 | MapMan:19.3.2.1.3 | Gene3D:2.130.10.10 | ProteinID:CCB49889 | ProteinID:CCB49889.1 |
UniProt:F6HC09 | EMBL:FN595514 | GO:GO:0000422 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 |
GO:GO:0006497 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009056 | GO:GO:0009058 |
GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0019898 | GO:GO:0032266 |
GO:GO:0034045 | GO:GO:0034497 | GO:GO:0044804 | GO:GO:0080025 | InterPro:IPR001680 | InterPro:IPR015943 |
EntrezGene:LOC100248334 | wikigene:LOC100248334 | PFAM:PF00400 | PANTHER:PTHR11227 | PANTHER:PTHR11227:SF45 | SMART:SM00320 |
SUPFAM:SSF50978 | UniParc:UPI00015CB058 | ArrayExpress:VIT_13s0067g00170 | EnsemblPlantsGene:VIT_13s0067g00170 | EnsemblPlants:VIT_13s0067g00170.t01 | unigene:Vvi.11942 |
InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom_sf | RefSeq:XP_002267266 | RefSeq:XP_002267266.1 | : |
Description
No Description!
Coordinates
chr13:-:116979..119653
Molecular Weight (calculated)
45352.9 Da
IEP (calculated)
7.832
GRAVY (calculated)
-0.159
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSVSTSRG MLPSARLDAH GSNSGTPGSF GQSVPEFNDT DETGLLSVSW NQDHGCFAAG TTHGFRIYSC DPFKEIFRRD LKSGGFGIVE MLFRSNILAL
101: VGAGTNSQYP PSKVIIWDDY ERRCIGEFSF RSDVRAVKLR RDRIVVVVEH KIYVYNFTDL KLLQQIETLA NPRGLCCLSH HSNTFVLACP GLQRGLVRIE
201: HFGLNMTKLI KAHDSHVACL TLTMDGLLLA SASMKGTLIR IFNTMDGTRL QEVRRGSDNA EIYSIALSPN VQWLAVSSEK GTVHIFNLRV RVVGEDSSNH
301: SITAQGPAPF YRNSSNSLDA LISPNAGANP GSSLSFMKGF LPKYFSSEWS FAQFRVPEDT QFIATFGSQN TVIIVGMDGS FYRCSFDHLN GGEMLQQEYH
401: SFLKKGHLES
101: VGAGTNSQYP PSKVIIWDDY ERRCIGEFSF RSDVRAVKLR RDRIVVVVEH KIYVYNFTDL KLLQQIETLA NPRGLCCLSH HSNTFVLACP GLQRGLVRIE
201: HFGLNMTKLI KAHDSHVACL TLTMDGLLLA SASMKGTLIR IFNTMDGTRL QEVRRGSDNA EIYSIALSPN VQWLAVSSEK GTVHIFNLRV RVVGEDSSNH
301: SITAQGPAPF YRNSSNSLDA LISPNAGANP GSSLSFMKGF LPKYFSSEWS FAQFRVPEDT QFIATFGSQN TVIIVGMDGS FYRCSFDHLN GGEMLQQEYH
401: SFLKKGHLES
001: MSSTVSNPQG ILQPGSFLLP ESESMKKEEA ELVSVCWNQD SSCFAAGTSH GFRIYNCEPF KETFRRELKD GGFKIVEMLF RSNILALVGG GPNSQYPSSK
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP
Arabidopsis Description
ATG18CAutophagy-related protein 18c [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.