CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039703_P001	Maize	cytosol	95.24	95.92
Zm00001d008691_P001	Maize	cytosol	92.86	89.66
Os01t0168500-01	Rice	cytosol	88.57	89.21
TraesCS3D01G095500.1	Wheat	cytosol	87.14	87.77
HORVU3Hr1G017150.1	Barley	cytosol	87.14	87.77
TraesCS3B01G110900.1	Wheat	cytosol	86.67	87.29
TraesCS3A01G095300.1	Wheat	cytosol	86.67	87.29
GSMUA_Achr10P...	Banana	cytosol, plastid	72.86	73.21
KRH64240	Soybean	cytosol, plastid	71.43	71.6
HORVU3Hr1G017140.1	Barley	extracellular, plasma membrane	11.67	71.01
CDY27213	Canola	cytosol	65.0	70.54
KRH53692	Soybean	plastid	70.48	70.48
CDX72135	Canola	cytosol	64.76	70.28
CDX72134	Canola	cytosol	64.76	70.28
AT2G40810.1	Thale cress	cytosol	65.71	70.23
AT3G56440.1	Thale cress	cytosol	65.24	70.08
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	67.86	69.51
Solyc06g048510.2.1	Tomato	cytosol	67.38	68.03
Bra016968.1-P	Field mustard	cytosol, plastid	65.71	67.65
CDY06959	Canola	cytosol, plastid	65.0	66.91
CDY14745	Canola	cytosol, plastid	64.76	66.67
GSMUA_AchrUn_...	Banana	cytosol, plastid	59.76	59.34
KXG21420	Sorghum	peroxisome	47.38	49.87
EES04163	Sorghum	cytosol	52.62	48.46
OQU90455	Sorghum	cytosol, mitochondrion	30.48	31.68
KXG31257	Sorghum	cytosol	24.29	27.49

Protein Annotations

EnsemblPlants:OQU86240	EnsemblPlantsGene:SORBI_3003G053800	EntrezGene:8056558	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf
PANTHER:PTHR11227	PANTHER:PTHR11227:SF45	ProteinID:OQU86240	ProteinID:OQU86240.1	SMART:SM00320	SUPFAM:SSF50978
unigene:Sbi.14988	UniParc:UPI0009DC8A1B	UniProt:A0A1W0VVT7	MapMan:19.3.2.1.3	:	:

Description

hypothetical protein

Coordinates

chr3:-:4873989..4876860

Molecular Weight (calculated)

46466.6 Da

IEP (calculated)

8.118

GRAVY (calculated)

-0.175

Length

420 amino acids

Sequence
(BLAST)

001: MSSQVSTSRG LHPPGKLGTF ESPHAWPLPA PTAQPEAGRG DDQEVRLLSV AWNQDCGCFA AGTSNGFRIF NCEPFKETFR RDLKSGGFGI VEMLFRCNIL
101: ALVGGGSNVQ YPPNKVMIWD DHQSRCIGEF AFRSDVRAVK LAKDYIVIVL ERKIFVYNFT DLKLLYQIDT LSNPKGLCCL SHHSNTSVLA CPGVHQGHVR
201: VEHFGLKMAK TIPAHDSHIS CMSLTMDGLL LATASSKGTL IRIFNTMDGT RLQEDMQVRR GLDKAEIYSI ALSPNVQWLA VSSDKGTVHI FSLRVRVAGE
301: DASSEQRALE GPRMDHQNSS SSIDPLIQAN TGSNASSSLS FMRGILPKYF SSEWSFAQFH LPEVTRYIVA FGAQNTVMMV GLDGSFYRCS FDQVNGGQML
401: QKEYFRFLKS DNPPFRTAAA

Best Arabidopsis Sequence Match ( AT3G56440.1 )
(BLAST)

001: MDPRRNFQPG GYDSRNTFTS GSFGPPDFGE SDEAELVSVS WNQDYSCFAA GTSHGFRIYN CEPFKETFRR ELKDGGFKIV EMLFRSNILA LVGGGPNSQY
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R

Arabidopsis Description

ATG18DAutophagy-related protein 18d [Source:UniProtKB/Swiss-Prot;Acc:Q0WPK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.