CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042215_P002	Maize	cytosol, extracellular	88.16	89.53
Os01t0934000-01	Rice	plasma membrane	89.04	88.84
Zm00001d011920_P003	Maize	cytosol	90.79	85.71
GSMUA_Achr11P...	Banana	cytosol	54.61	83.0
TraesCS3A01G453200.1	Wheat	cytosol	82.89	77.46
TraesCS3B01G490900.1	Wheat	nucleus	82.89	76.52
Zm00001d015812_P001	Maize	cytosol	28.51	76.02
HORVU3Hr1G098020.1	Barley	cytosol, plastid	82.89	74.41
Zm00001d010645_P001	Maize	cytosol	47.15	70.72
KRG92887	Soybean	cytosol	55.04	66.58
VIT_14s0060g02380.t01	Wine grape	plastid	61.18	65.65
KRH33898	Soybean	nucleus	53.95	65.43
PGSC0003DMT400063510	Potato	nucleus	58.11	59.68
Solyc01g099400.2.1	Tomato	mitochondrion	36.62	52.68
OQU86240	Sorghum	cytosol	48.46	52.62
GSMUA_Achr8P10070_001	Banana	cytosol	58.11	43.95
KXG21420	Sorghum	peroxisome	35.09	40.1
OQU90455	Sorghum	cytosol, mitochondrion	30.92	34.9
KXG31257	Sorghum	cytosol	23.68	29.11

Protein Annotations

MapMan:19.3.2.1.3	EntrezGene:8063624	UniProt:C5XH35	EnsemblPlants:EES04163	ProteinID:EES04163	ProteinID:EES04163.1
GO:GO:0000422	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006497
GO:GO:0006914	GO:GO:0006950	GO:GO:0006970	GO:GO:0006979	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0009056	GO:GO:0009058	GO:GO:0009414	GO:GO:0009605
GO:GO:0009607	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0009991	GO:GO:0010150
GO:GO:0010508	GO:GO:0016020	GO:GO:0016043	GO:GO:0019538	GO:GO:0019898	GO:GO:0032266
GO:GO:0034045	GO:GO:0034497	GO:GO:0042594	GO:GO:0044804	GO:GO:0050832	GO:GO:0080025
InterPro:IPR001680	PFAM:PF00400	PANTHER:PTHR11227	PANTHER:PTHR11227:SF33	SMART:SM00320	EnsemblPlantsGene:SORBI_3003G416400
SUPFAM:SSF50978	unigene:Sbi.1162	UniParc:UPI0001A8563C	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002459043.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:72253139..72258043

Molecular Weight (calculated)

48863.6 Da

IEP (calculated)

5.594

GRAVY (calculated)

-0.289

Length

456 amino acids

Sequence
(BLAST)

001: MATPAAAPAP PNPNPVPDDP PLQQQHEEEE EESPEPEPET APTSLTTSID PTPSGGEESE SDDSSSVSSA PSSAPAPAPA AAAAAAPSPA AKDLLHISFN
101: QDYGCFAAGT KSGFRIYNCD PFREIFRRDL AAVGDGATGA GVGGGAGGGG IGVVEMLFRC NILALVGGGD NPHYPPNKVM IWDDHQSRCI GELSFRSPVR
201: GVRLRRDRII VVLENKIFVY NFADLKLVHQ IETAPNPKGL CAVSQQPGSI VLVCPGAQKG QIRVEHYGAR KTKFINAHTS RVACFALSQD GRLIATASTK
301: GTLVRIYNAA EGNLLQEVRR GADRAEIYSL AFSNNLQYLS VSSDKGTIHV FNLKINVGST ANDKPMPAPD PEVPHISPPL SFIKGVLPKY FHSEWSVAQF
401: RLHEGEQYIV AFGHEKNTVA VVGMDGSFYR CQFDPVNGGE MLQLECYNFL KPSDQP

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.