Factsheet for Solyc01g099400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	54.57	57.67
PGSC0003DMT400063510	Potato	nucleus	76.97	54.95
KRG92887	Soybean	cytosol	63.09	53.05
KRH33898	Soybean	nucleus	62.78	52.93
Solyc08g074340.1.1	Tomato	cytosol, extracellular	32.49	51.24
VIT_14s0060g02380.t01	Wine grape	plastid	64.04	47.76
Solyc08g006010.2.1	Tomato	cytosol	51.42	38.9
Zm00001d042215_P002	Maize	cytosol, extracellular	53.31	37.64
Os01t0934000-01	Rice	plasma membrane	53.0	36.76
EES04163	Sorghum	cytosol	52.68	36.62
Zm00001d011920_P003	Maize	cytosol	52.68	34.58
TraesCS3A01G453200.1	Wheat	cytosol	51.73	33.61
TraesCS3B01G490900.1	Wheat	nucleus	51.73	33.2
HORVU3Hr1G098020.1	Barley	cytosol, plastid	52.05	32.48
Solyc06g048510.2.1	Tomato	cytosol	42.59	32.45
GSMUA_Achr8P10070_001	Banana	cytosol	54.57	28.69
Solyc04g076720.1.1	Tomato	plastid	20.19	26.02
Solyc07g006120.2.1	Tomato	cytosol	21.77	18.9
Zm00001d010645_P001	Maize	cytosol	17.35	18.09
Zm00001d015812_P001	Maize	cytosol	6.31	11.7

Protein Annotations

MapMan:19.3.2.1.3	Gene3D:2.130.10.10	GO:GO:0000422	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464
GO:GO:0006497	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0019538	GO:GO:0019898	GO:GO:0032266
GO:GO:0034045	GO:GO:0034497	GO:GO:0044804	GO:GO:0080025	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:K4B0X7	PFAM:PF00400	PFscan:PS50294	PANTHER:PTHR11227	PANTHER:PTHR11227:SF33
SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc01g099400.2	EnsemblPlants:Solyc01g099400.2.1	UniParc:UPI0002768D6F	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:89668473..89674209

Molecular Weight (calculated)

34624.3 Da

IEP (calculated)

9.339

GRAVY (calculated)

-0.087

Length

317 amino acids

Sequence
(BLAST)

001: MSTSKAKRNL LPVKFLLPYT CTPYLSSIIS FSSSSILFSH RLSFSLYAAT RNSSAICRRS PPYLMTSTIS ASSPWPEGPF VSPPMSENSP DSVANPKGLC
101: EVSQVSGSMV LVCPGLQKGQ VRVEHYASKR TKFIMAHDSR IVCFALTNDG RLLATSSSKG TLVRIYNTLD GSLVQEVRRG ADRAEIYSLA FSPTAQWLAV
201: SSDKGTVHVF NLKVDSAALG VDRPRGASES NATSPSAVSH LSFIRGVLPK YFSSEWSVAQ FRLQEGLQHI VAFGHQKNTV VILGMDGSFY RCQYDAATGG
301: EMTLLEHHSF LKSEENF

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.