Factsheet for TraesCS3B01G490900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G453200.1	Wheat	cytosol	96.36	97.54
HORVU3Hr1G098020.1	Barley	cytosol, plastid	89.27	86.81
Os01t0934000-01	Rice	plasma membrane	78.54	84.9
EES04163	Sorghum	cytosol	76.52	82.89
GSMUA_Achr11P...	Banana	cytosol	49.19	81.0
Zm00001d042215_P002	Maize	cytosol, extracellular	71.66	78.84
Zm00001d011920_P003	Maize	cytosol	74.09	75.78
KRG92887	Soybean	cytosol	51.62	67.64
KRH33898	Soybean	nucleus	50.0	65.69
VIT_14s0060g02380.t01	Wine grape	plastid	55.06	64.0
Zm00001d010645_P001	Maize	cytosol	37.04	60.2
PGSC0003DMT400063510	Potato	nucleus	52.83	58.78
Zm00001d015812_P001	Maize	cytosol	20.24	58.48
TraesCS3B01G110900.1	Wheat	cytosol	45.75	54.2
Solyc01g099400.2.1	Tomato	mitochondrion	33.2	51.73
TraesCS1B01G132900.1	Wheat	cytosol	36.84	47.27
GSMUA_Achr8P10070_001	Banana	cytosol	55.47	45.44
TraesCS2B01G134400.1	Wheat	cytosol	21.46	33.12
TraesCS2B01G134500.1	Wheat	cytosol	26.11	32.49
TraesCS2B01G134900.1	Wheat	cytosol	26.11	30.79
TraesCS4B01G179000.2	Wheat	plastid	28.34	30.37
TraesCS6B01G386200.1	Wheat	cytosol, mitochondrion, plastid	20.24	26.81

Protein Annotations

EnsemblPlants:TraesCS3B01G490900.1	EnsemblPlantsGene:TraesCS3B01G490900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227	PANTHER:PTHR11227:SF33	PFAM:PF00400	SEG:seg
SMART:SM00320	SUPFAM:SSF50978	MapMan:19.3.2.1.3	:	:	:

Description

No Description!

Coordinates

chr3B:-:736925495..736931125

Molecular Weight (calculated)

53403.8 Da

IEP (calculated)

5.230

GRAVY (calculated)

-0.430

Length

494 amino acids

Sequence
(BLAST)

001: MATPALPNPS PPLDDPPPPE PKPRRETKVW KPKVRDPDAR EPPAAAQDPE EDAPEEPEPD QDEGPEPPPL PTDAIEPTPS GAEEEDADDS SSVSSVSSAA
101: AATDAATATG GKTERPFPAA TDLLHISYNQ DYGCFAAGTK TGFRIYNCDP FREIFRRDLG PSPPAAPGEE AAQAIHQPPA AASGGGGGIG VVEMLFRCNI
201: LALVGGGDAP HYPPNKVMIW DDHQSRCIGE LSFKSPVRGV RLRRDRIVVV LENKIFVYNF ADLKLVQQIE TAPNPKGLCS VSQQPGSIVL VCPGAQKGQI
301: RVEHYGARKT KFINAHASRV ACFALSQDGR LIATASTKGT LVRIFNAAEG NLLQEVRRGA DRAEIYSLAF SNNLQYLAVS SDKGTIHVFN LKINVGLTTN
401: DKPLPAPDAD VPHMSPSFSF IKGVLPKYFH SEWSVAQFRL HEGEQYIVAF GHEKNTVAVV GMDGSFYRCQ FDPVNGGEMQ QLECHNFLKP SDQP

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.