Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04163 | Sorghum | cytosol | 88.84 | 89.04 |
| Zm00001d042215_P002 | Maize | cytosol, extracellular | 83.59 | 85.08 |
| GSMUA_Achr11P... | Banana | cytosol | 54.7 | 83.33 |
| Zm00001d011920_P003 | Maize | cytosol | 85.78 | 81.16 |
| TraesCS3A01G453200.1 | Wheat | cytosol | 84.9 | 79.51 |
| TraesCS3B01G490900.1 | Wheat | nucleus | 84.9 | 78.54 |
| HORVU3Hr1G098020.1 | Barley | cytosol, plastid | 85.34 | 76.77 |
| KRG92887 | Soybean | cytosol | 56.24 | 68.17 |
| Zm00001d015812_P001 | Maize | cytosol | 25.16 | 67.25 |
| KRH33898 | Soybean | nucleus | 54.7 | 66.49 |
| Zm00001d010645_P001 | Maize | cytosol | 43.98 | 66.12 |
| VIT_14s0060g02380.t01 | Wine grape | plastid | 61.49 | 66.12 |
| PGSC0003DMT400063510 | Potato | nucleus | 59.08 | 60.81 |
| Os01t0168500-01 | Rice | cytosol | 48.36 | 53.0 |
| Solyc01g099400.2.1 | Tomato | mitochondrion | 36.76 | 53.0 |
| Os05t0169200-01 | Rice | cytosol | 38.51 | 46.07 |
| GSMUA_Achr8P10070_001 | Banana | cytosol | 58.21 | 44.11 |
| Os02t0791800-01 | Rice | cytosol | 23.85 | 29.14 |
Protein Annotations
| MapMan:19.3.2.1.3 | EntrezGene:4326829 | EMBL:AK060679 | ProteinID:BAB93248.1 | ProteinID:BAF07221.1 | ProteinID:BAS76065.1 |
| ProteinID:EAZ14739.1 | GO:GO:0000422 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 |
| GO:GO:0006497 | GO:GO:0006914 | GO:GO:0006950 | GO:GO:0006970 | GO:GO:0006979 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009414 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 | GO:GO:0009991 |
| GO:GO:0010150 | GO:GO:0010508 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0019898 |
| GO:GO:0032266 | GO:GO:0034045 | GO:GO:0034497 | GO:GO:0042594 | GO:GO:0044804 | GO:GO:0050832 |
| GO:GO:0080025 | InterPro:IPR001680 | InterPro:IPR017986 | EnsemblPlantsGene:Os01g0934000 | EnsemblPlants:Os01t0934000-01 | PFAM:PF00400 |
| PFscan:PS50294 | PANTHER:PTHR11227 | PANTHER:PTHR11227:SF33 | UniProt:Q8LR61 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI00000AB46A | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_015621196.1 | SEG:seg |
Description
AUTOPHAGY ASSOCIATED GENE 18CWD40 repeat-like domain containing protein. (Os01t0934000-01);WD40 repeat-like domain containing protein. (Os01t0934000-02)
Coordinates
chr1:-:40966688..40971055
Molecular Weight (calculated)
48724.5 Da
IEP (calculated)
6.568
GRAVY (calculated)
-0.296
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPPHDASP APPNPNPVSD DPPPPPPVTE TKPEPEPPLP TTSIDPTPSG DEESGDDSSS SVSSASSTSP TAAAAAAAAG GGGGGGGERA APHPAAKDLL
101: HISFNQDYGC FAAGTKSGFR IYNCDPFREI FRRDLGAAGD NGVGGGGGGI GVVEMLFRCN ILALVGGGDA PHYPPNKVMI WDDHQSRCIG ELSFRSPVRG
201: VRLRRDRIIV VLENKIFVYN FADLKLVHQI ETAPNPKGLC AVSQQPGSIV LVCPGAQKGQ VRVEHYGARK TKFINAHTSR VACFALSQDG RLIATASTKG
301: TLVRIYNAAE GNLLQEVRRG ADRAEIYSLA FSNNLQYLAV SSDKGTIHVF NLKINVGLTT NDKPLPAPDP DVPHISPSLS FIKGVLPKYF HSEWSVAQFR
401: LHEGEQYIVA FGHEKNTVAV VGMDGSFYRC QFDPVNGGEM LQLECYNFLK PSSDQPQ
101: HISFNQDYGC FAAGTKSGFR IYNCDPFREI FRRDLGAAGD NGVGGGGGGI GVVEMLFRCN ILALVGGGDA PHYPPNKVMI WDDHQSRCIG ELSFRSPVRG
201: VRLRRDRIIV VLENKIFVYN FADLKLVHQI ETAPNPKGLC AVSQQPGSIV LVCPGAQKGQ VRVEHYGARK TKFINAHTSR VACFALSQDG RLIATASTKG
301: TLVRIYNAAE GNLLQEVRRG ADRAEIYSLA FSNNLQYLAV SSDKGTIHVF NLKINVGLTT NDKPLPAPDP DVPHISPSLS FIKGVLPKYF HSEWSVAQFR
401: LHEGEQYIVA FGHEKNTVAV VGMDGSFYRC QFDPVNGGEM LQLECYNFLK PSSDQPQ
001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF
Arabidopsis Description
ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.