Factsheet for Os01t0168500-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G095500.1	Wheat	cytosol	89.21	89.21
HORVU3Hr1G017150.1	Barley	cytosol	89.21	89.21
TraesCS3B01G110900.1	Wheat	cytosol	88.73	88.73
TraesCS3A01G095300.1	Wheat	cytosol	88.73	88.73
OQU86240	Sorghum	cytosol	89.21	88.57
Zm00001d039703_P001	Maize	cytosol	88.49	88.49
Zm00001d008691_P001	Maize	cytosol	85.13	81.61
GSMUA_Achr10P...	Banana	cytosol, plastid	72.9	72.73
HORVU3Hr1G017140.1	Barley	extracellular, plasma membrane	11.75	71.01
KRH64240	Soybean	cytosol, plastid	70.98	70.64
KRH53692	Soybean	plastid	70.26	69.76
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	68.35	69.51
CDY27213	Canola	cytosol	64.03	68.99
AT2G40810.1	Thale cress	cytosol	64.99	68.96
CDX72135	Canola	cytosol	63.79	68.73
CDX72134	Canola	cytosol	63.79	68.73
Solyc06g048510.2.1	Tomato	cytosol	68.35	68.51
AT3G56440.1	Thale cress	cytosol	64.03	68.29
Bra016968.1-P	Field mustard	cytosol, plastid	63.79	65.2
CDY14745	Canola	cytosol, plastid	63.31	64.71
CDY06959	Canola	cytosol, plastid	63.31	64.71
Os05t0169200-01	Rice	cytosol	56.83	62.04
GSMUA_AchrUn_...	Banana	cytosol, plastid	59.71	58.87
Os01t0934000-01	Rice	plasma membrane	53.0	48.36
Os02t0791800-01	Rice	cytosol	24.7	27.54

Protein Annotations

MapMan:19.3.2.1.3	Gene3D:2.130.10.10	EntrezGene:4325192	EMBL:AK072657	ProteinID:BAD68311.1	ProteinID:BAF04044.1
ProteinID:BAS70594.1	GO:GO:0000422	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975
GO:GO:0006004	GO:GO:0006464	GO:GO:0006497	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016740
GO:GO:0016757	GO:GO:0019538	GO:GO:0019898	GO:GO:0032266	GO:GO:0034045	GO:GO:0034497
GO:GO:0044804	GO:GO:0046872	GO:GO:0080025	InterPro:IPR001680	InterPro:IPR015943	EnsemblPlantsGene:Os01g0168500
EnsemblPlants:Os01t0168500-01	PFAM:PF00400	PANTHER:PTHR11227	PANTHER:PTHR11227:SF45	UniProt:Q5VQF8	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0000457E0E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015620970.1
RefSeq:XP_015620972.1	RefSeq:XP_015620973.1	:	:	:	:

Description

AUTOPHAGY ASSOCIATED GENE 18BWD40 repeat-like domain containing protein. (Os01t0168500-01)

Coordinates

chr1:+:3505759..3510343

Molecular Weight (calculated)

46189.1 Da

IEP (calculated)

8.175

GRAVY (calculated)

-0.196

Length

417 amino acids

Sequence
(BLAST)

001: MSSQVSTSRG LPSPSKLGTF ESPHTWQMSG PTGQAEAGSS DDQDIRLLSV SWNQDFGCFA AGTSNGFRIF NCDPFKETFR RDLKSGGFGI VEMLFRCNIL
101: ALVGGGSNAH YPPNKVMIWD DHRSHCIGEF AFRSDVRAVK LGKDYIVIVL ERKIYVYNFT DLKLLHQIET QSNPKGLCCL SHHSNTSVLA CPGVHQGHVR
201: VEHFGLKVTR MISAHDSHIS CMALTMDGLL LATASMKGTL IRIFNTMDGT RLQEVRRGLD KADIYSIALS PNVQWLAVSS DKGTVHIFSL RVRVAGEDAS
301: NEQRSLEGPR MDHQNSSSSI DPLIQTNTGS NASSSLSFMK GILPKYFSSE WSFAQFHLPE VTRYIVAFGA QNTVMMVGLD GSFYRCSFDQ VNGGQMLQKE
401: YFRFIKADLT PLRTSAP

Best Arabidopsis Sequence Match ( AT3G56440.1 )
(BLAST)

001: MDPRRNFQPG GYDSRNTFTS GSFGPPDFGE SDEAELVSVS WNQDYSCFAA GTSHGFRIYN CEPFKETFRR ELKDGGFKIV EMLFRSNILA LVGGGPNSQY
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R

Arabidopsis Description

ATG18DAutophagy-related protein 18d [Source:UniProtKB/Swiss-Prot;Acc:Q0WPK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.