Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27213 | Canola | cytosol | 86.19 | 87.08 |
| CDX72134 | Canola | cytosol | 86.19 | 87.08 |
| CDX72135 | Canola | cytosol | 86.19 | 87.08 |
| AT2G40810.1 | Thale cress | cytosol | 81.84 | 81.42 |
| Solyc06g048510.2.1 | Tomato | cytosol | 72.63 | 68.27 |
| KRH64240 | Soybean | cytosol, plastid | 72.89 | 68.02 |
| KRH53692 | Soybean | plastid | 72.38 | 67.38 |
| VIT_13s0067g00170.t01 | Wine grape | cytosol, plastid | 70.33 | 67.07 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 70.59 | 66.03 |
| OQU86240 | Sorghum | cytosol | 70.08 | 65.24 |
| Zm00001d039703_P001 | Maize | cytosol | 69.57 | 65.23 |
| TraesCS3D01G095500.1 | Wheat | cytosol | 69.05 | 64.75 |
| TraesCS3B01G110900.1 | Wheat | cytosol | 69.05 | 64.75 |
| HORVU3Hr1G017150.1 | Barley | cytosol | 68.8 | 64.51 |
| TraesCS3A01G095300.1 | Wheat | cytosol | 68.8 | 64.51 |
| Os01t0168500-01 | Rice | cytosol | 68.29 | 64.03 |
| Zm00001d008691_P001 | Maize | cytosol | 68.8 | 61.84 |
| TraesCS1B01G132900.1 | Wheat | cytosol | 58.57 | 59.48 |
| TraesCS1D01G114300.1 | Wheat | cytosol | 58.31 | 59.22 |
| TraesCS1A01G112700.1 | Wheat | cytosol | 57.8 | 58.7 |
| HORVU3Hr1G017140.1 | Barley | extracellular, plasma membrane | 9.97 | 56.52 |
| Os05t0169200-01 | Rice | cytosol | 54.99 | 56.28 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 60.61 | 56.03 |
| AT3G62770.1 | Thale cress | nucleus, plastid | 55.75 | 51.29 |
| AT5G05150.1 | Thale cress | cytosol | 46.29 | 48.4 |
| KXG21420 | Sorghum | peroxisome | 47.06 | 46.12 |
| AT4G30510.1 | Thale cress | cytosol | 25.06 | 26.78 |
Protein Annotations
| MapMan:19.3.2.1.3 | Gene3D:2.130.10.10 | EntrezGene:824811 | ProteinID:AEE79522.1 | EMBL:AK229064 | ArrayExpress:AT3G56440 |
| EnsemblPlantsGene:AT3G56440 | RefSeq:AT3G56440 | TAIR:AT3G56440 | RefSeq:AT3G56440-TAIR-G | EnsemblPlants:AT3G56440.1 | TAIR:AT3G56440.1 |
| Symbol:ATATG18D | Unigene:At.22742 | ProteinID:CAB88047.1 | GO:GO:0000422 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005774 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0006497 | GO:GO:0006810 | GO:GO:0006914 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0019898 | GO:GO:0032266 |
| GO:GO:0034045 | GO:GO:0034497 | GO:GO:0044804 | GO:GO:0080025 | InterPro:IPR001680 | InterPro:IPR015943 |
| RefSeq:NP_191203.2 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0007611 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009025 | PO:PO:0009046 | PANTHER:PTHR11227 | PANTHER:PTHR11227:SF45 | UniProt:Q0WPK3 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000019702A | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
ATG18DAutophagy-related protein 18d [Source:UniProtKB/Swiss-Prot;Acc:Q0WPK3]
Coordinates
chr3:+:20926001..20928993
Molecular Weight (calculated)
43890.1 Da
IEP (calculated)
6.982
GRAVY (calculated)
-0.235
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPRRNFQPG GYDSRNTFTS GSFGPPDFGE SDEAELVSVS WNQDYSCFAA GTSHGFRIYN CEPFKETFRR ELKDGGFKIV EMLFRSNILA LVGGGPNSQY
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.