Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72248 | Canola | plastid | 91.53 | 91.28 |
| Bra024070.1-P | Field mustard | plastid | 90.98 | 90.98 |
| CDY39210 | Canola | cytosol, plastid | 90.98 | 90.74 |
| VIT_11s0037g00970.t01 | Wine grape | cytosol | 56.01 | 77.95 |
| VIT_03s0091g00190.t01 | Wine grape | plastid | 18.58 | 72.34 |
| KRH02984 | Soybean | cytosol | 69.4 | 68.83 |
| KRH72365 | Soybean | cytosol | 68.58 | 68.21 |
| Solyc07g006120.2.1 | Tomato | cytosol | 66.94 | 67.12 |
| PGSC0003DMT400028996 | Potato | cytosol | 66.12 | 66.3 |
| KRH07770 | Soybean | plastid | 36.61 | 64.11 |
| KRH33489 | Soybean | cytosol | 24.59 | 61.64 |
| GSMUA_Achr9P13430_001 | Banana | plastid | 61.2 | 60.87 |
| Zm00001d018355_P005 | Maize | cytosol, plastid | 57.38 | 56.6 |
| KXG31257 | Sorghum | cytosol | 57.1 | 56.33 |
| TraesCS6B01G386200.1 | Wheat | cytosol, mitochondrion, plastid | 53.83 | 52.81 |
| TraesCS6A01G353600.1 | Wheat | cytosol, mitochondrion, plastid | 53.55 | 52.55 |
| TraesCS6D01G335900.1 | Wheat | cytosol, mitochondrion, plastid | 53.55 | 52.55 |
| Os02t0791800-01 | Rice | cytosol | 52.19 | 51.07 |
| HORVU6Hr1G084430.3 | Barley | cytosol | 53.83 | 44.17 |
| AT3G56440.1 | Thale cress | cytosol | 26.78 | 25.06 |
| AT2G40810.1 | Thale cress | cytosol | 26.23 | 24.43 |
| AT3G62770.1 | Thale cress | nucleus, plastid | 27.32 | 23.53 |
| AT5G05150.1 | Thale cress | cytosol | 23.5 | 22.99 |
Protein Annotations
| MapMan:19.3.2.1.3 | Gene3D:2.130.10.10 | EntrezGene:829174 | ProteinID:AEE85774.2 | ArrayExpress:AT4G30510 | EnsemblPlantsGene:AT4G30510 |
| RefSeq:AT4G30510 | TAIR:AT4G30510 | RefSeq:AT4G30510-TAIR-G | EnsemblPlants:AT4G30510.1 | TAIR:AT4G30510.1 | Symbol:ATATG18B |
| EMBL:AY142529 | Unigene:At.31830 | ProteinID:CAB79769.1 | GO:GO:0000422 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005774 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0006497 | GO:GO:0006810 | GO:GO:0006914 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0019898 | GO:GO:0032266 |
| GO:GO:0034045 | GO:GO:0034497 | GO:GO:0044804 | GO:GO:0080025 | InterPro:IPR001680 | InterPro:IPR015943 |
| RefSeq:NP_001320091.1 | RefSeq:NP_001320092.1 | PO:PO:0000293 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009025 |
| PO:PO:0009046 | PANTHER:PTHR11227 | PANTHER:PTHR11227:SF17 | UniProt:Q8H1Q8 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI0002B8CBE4 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom_sf | : | : |
Description
ATG18BAutophagy-related protein 18b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Q8]
Coordinates
chr4:-:14905097..14907645
Molecular Weight (calculated)
39879.6 Da
IEP (calculated)
8.296
GRAVY (calculated)
0.090
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MANLSSLPSP IYCVSFNQDN SGFAISWKDS FKIFDSTTGR LCYERAAGAF VIVEMLYSSD LLAIVGAGEQ ASLSPRRLCL FKTTTGLPLR ELNFLTSILA
101: VRMNKKRLVV VLLEKTFVYD LNTLVMLDTI DTVPNPKGLS AFSPSLEGCY LAVPASTTKG SVLVYNVMDL QSHSEIDAHR SPLAAIALSS NGMYIATGSE
201: QGTLIRVHLV SEATKSYSFR RGTYPSTIYS LSFGPSTQLP DILIATSSSG SIHAFSLSLA INQRSKRSTS FLGSVLPDSV SDALDPAHHH VLQNAVSSGI
301: RSYAVVRKID KLEGTSSPSH FTSLRATVSV ITYNGYFQEY TLSINNKNES LWTLEREFNL FSITTG
101: VRMNKKRLVV VLLEKTFVYD LNTLVMLDTI DTVPNPKGLS AFSPSLEGCY LAVPASTTKG SVLVYNVMDL QSHSEIDAHR SPLAAIALSS NGMYIATGSE
201: QGTLIRVHLV SEATKSYSFR RGTYPSTIYS LSFGPSTQLP DILIATSSSG SIHAFSLSLA INQRSKRSTS FLGSVLPDSV SDALDPAHHH VLQNAVSSGI
301: RSYAVVRKID KLEGTSSPSH FTSLRATVSV ITYNGYFQEY TLSINNKNES LWTLEREFNL FSITTG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.