Factsheet for PGSC0003DMT400028996

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g006120.2.1	Tomato	cytosol	98.08	98.08
VIT_11s0037g00970.t01	Wine grape	cytosol	55.62	77.19
VIT_03s0091g00190.t01	Wine grape	plastid	19.45	75.53
KRH02984	Soybean	cytosol	68.22	67.48
KRH72365	Soybean	cytosol	67.12	66.58
KRH33489	Soybean	cytosol	26.58	66.44
CDY39210	Canola	cytosol, plastid	66.58	66.21
Bra024070.1-P	Field mustard	plastid	66.3	66.12
AT4G30510.1	Thale cress	cytosol	66.3	66.12
CDX72248	Canola	plastid	66.3	65.94
KRH07770	Soybean	plastid	37.53	65.55
GSMUA_Achr9P13430_001	Banana	plastid	60.55	60.05
KXG31257	Sorghum	cytosol	54.79	53.91
Zm00001d018355_P005	Maize	cytosol, plastid	54.52	53.64
TraesCS6B01G386200.1	Wheat	cytosol, mitochondrion, plastid	53.42	52.28
TraesCS6D01G335900.1	Wheat	cytosol, mitochondrion, plastid	52.88	51.74
TraesCS6A01G353600.1	Wheat	cytosol, mitochondrion, plastid	52.6	51.47
Os02t0791800-01	Rice	cytosol	52.6	51.34
HORVU6Hr1G084430.3	Barley	cytosol	53.15	43.5
PGSC0003DMT400038462	Potato	cytosol	29.86	26.01
PGSC0003DMT400076107	Potato	cytosol	29.04	24.77
PGSC0003DMT400063510	Potato	nucleus	27.67	22.75

Protein Annotations

EntrezGene:102595961	MapMan:19.3.2.1.3	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001680	InterPro:IPR015943	UniProt:M1AS17
EnsemblPlantsGene:PGSC0003DMG400011161	PGSC:PGSC0003DMG400011161	EnsemblPlants:PGSC0003DMT400028996	PANTHER:PTHR11227	PANTHER:PTHR11227:SF17	SMART:SM00320
SUPFAM:SSF50978	TMHMM:TMhelix	UniParc:UPI0002951A17	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf
RefSeq:XP_006343586.1	:	:	:	:	:

Description

WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011161]

Coordinates

chr7:+:1493065..1499406

Molecular Weight (calculated)

39709.8 Da

IEP (calculated)

7.854

GRAVY (calculated)

0.131

Length

365 amino acids

Sequence
(BLAST)

001: MANQPSSYPI LCASFNQDHS CFAIGTREGF KIFDCKTGRL LYERVAGAFI IVEMLFSSSL LAIVGAGEQP SLSPRRLCLF NTVTGVALEE LNFLTSILAV
101: RMNKKRLIVI LQEKTFIYDI NSLKILDTID TVPNPKGLCA FSPSLDGSFL ALPASTTKGS LLVYNVSDLR LHCEIDAHRS PLAVLSLSSG GTHIATASEQ
201: GTMIRIHLVS DATKSYSFRR GSYSSNIFSL SFAPAAELPD ILLATSSSGS VHVFSLGSPP NQRSSGLLGS IKVPHTINDA LDPAQHCILH HAVPAGVRSN
301: TLIRKIEKFD GTATPEHVVL RATIPMITYG GYFLEYVYNV NHQNKSSWTL EREFNLLTAE TSSLP

Best Arabidopsis Sequence Match ( AT4G30510.1 )
(BLAST)

001: MANLSSLPSP IYCVSFNQDN SGFAISWKDS FKIFDSTTGR LCYERAAGAF VIVEMLYSSD LLAIVGAGEQ ASLSPRRLCL FKTTTGLPLR ELNFLTSILA
101: VRMNKKRLVV VLLEKTFVYD LNTLVMLDTI DTVPNPKGLS AFSPSLEGCY LAVPASTTKG SVLVYNVMDL QSHSEIDAHR SPLAAIALSS NGMYIATGSE
201: QGTLIRVHLV SEATKSYSFR RGTYPSTIYS LSFGPSTQLP DILIATSSSG SIHAFSLSLA INQRSKRSTS FLGSVLPDSV SDALDPAHHH VLQNAVSSGI
301: RSYAVVRKID KLEGTSSPSH FTSLRATVSV ITYNGYFQEY TLSINNKNES LWTLEREFNL FSITTG

Arabidopsis Description

ATG18BAutophagy-related protein 18b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Q8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.