Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g076720.1.1 | Tomato | plastid | 51.4 | 89.43 |
| Solyc08g074340.1.1 | Tomato | cytosol, extracellular | 41.36 | 88.06 |
| PGSC0003DMT400038462 | Potato | cytosol | 61.22 | 62.53 |
| PGSC0003DMT400063510 | Potato | nucleus | 56.78 | 54.73 |
| PGSC0003DMT400028996 | Potato | cytosol | 24.77 | 29.04 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400076107 | EnsemblPlantsGene:PGSC0003DMG402029595 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom_sf | PANTHER:PTHR11227 |
| PANTHER:PTHR11227:SF33 | PGSC:PGSC0003DMG402029595 | SEG:seg | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0002965EF1 |
| UniProt:M1CW72 | MapMan:19.3.2.1.3 | : | : | : | : |
Description
WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG402029595]
Coordinates
chr8:-:45199783..45204272
Molecular Weight (calculated)
47858.6 Da
IEP (calculated)
7.124
GRAVY (calculated)
-0.259
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTPSPFSPP FPLPNTSSKF QSLNLQRYLE QPEAQQHQLQ PQQAAVEQVN DESLHGSSIK NPESGVGSNH VFVNHSATAY HVTFNQDYGC FAIGTDRGFG
101: VYNCVPFGES FCRNFENIGG IGIIEMLFRS NILAFVGHGD HPQYPRNKVM IWDDQQSRCI HELCFRSEVR RIRLRKDCLV VVLEHKIFVY NFSNLELLFQ
201: IETTTNPKGL CEVSQTADQL VLVCPGLQKG QVWVKHNASK STKSIVAHDS VLACFALTRE GNLLATASTK GTLIRIFNTL EGTLLQEVRR GLDRAEIYSL
301: SFSPTAQWLA VSSDKGTVHV FSLKVNLGNR STDKSNCSSN SRVPVAASSS FSFIRGALPK YFSSEWSVAQ FRLPGVSQYI VTFGNENNTL TILGWDGSFF
401: RCKFDPASGK EMTQLEYHNF LEPEEPCN
101: VYNCVPFGES FCRNFENIGG IGIIEMLFRS NILAFVGHGD HPQYPRNKVM IWDDQQSRCI HELCFRSEVR RIRLRKDCLV VVLEHKIFVY NFSNLELLFQ
201: IETTTNPKGL CEVSQTADQL VLVCPGLQKG QVWVKHNASK STKSIVAHDS VLACFALTRE GNLLATASTK GTLIRIFNTL EGTLLQEVRR GLDRAEIYSL
301: SFSPTAQWLA VSSDKGTVHV FSLKVNLGNR STDKSNCSSN SRVPVAASSS FSFIRGALPK YFSSEWSVAQ FRLPGVSQYI VTFGNENNTL TILGWDGSFF
401: RCKFDPASGK EMTQLEYHNF LEPEEPCN
001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF
Arabidopsis Description
ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.